RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 C5orf51A6NDU8 294 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 H2BFMP0C1H6 154 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 CFPP27918 469 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 PNLIPRP2P54317 469 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 SNTB1Q13884 538 aaKnown RBP9.44□□□□□ -0.9
USP28-201ENST00000003302 C1orf100Q5SVJ3 147 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 GRINAQ7Z429 371 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 LYG2Q86SG7 212 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 ZNF440Q8IYI8 595 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 GPR84Q9NQS5 396 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 SYT7O43581 403 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 AHSA1O95433 338 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 PATE4P0C8F1 98 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 CD37P11049 281 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 PGCP20142 388 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 ACTBP60709 375 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 ACTG1P63261 375 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 AADACL3Q5VUY0 350 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 HLA-DQA1Q5Y7H0 255 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 PGAP1Q75T13 922 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 MITD1Q8WV92 249 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 RNF133Q8WVZ7 376 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 LYZL4Q96KX0 146 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 CD2P06729 351 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 FHITP49789 147 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 P2RY4P51582 365 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 ZNF121P58317 390 aaPredicted RBP9.44□□□□□ -0.9
USP28-201ENST00000003302 RSPO1Q2MKA7 263 aaPredicted RBP9.44□□□□□ -0.9
USP28-201ENST00000003302 KCTD18Q6PI47 426 aaPredicted RBP9.44□□□□□ -0.9
USP28-201ENST00000003302 ZNF704Q6ZNC4 412 aaPredicted RBP9.44□□□□□ -0.9
USP28-201ENST00000003302 ARMC10Q8N2F6 343 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 TAS2R8Q9NYW2 309 aa9.44□□□□□ -0.9
USP28-201ENST00000003302 FAM221AA4D161 298 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 IFI6P09912 130 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 ZNF823P16415 610 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 NTF4P34130 210 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 RPL35P42766 123 aaKnown RBP9.43□□□□□ -0.9
USP28-201ENST00000003302 DHPSP49366 369 aaPredicted RBP9.43□□□□□ -0.9
USP28-201ENST00000003302 PDSS1Q5T2R2 415 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 TSPO2Q5TGU0 170 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 MRPL48Q96GC5 212 aaKnown RBP9.43□□□□□ -0.9
USP28-201ENST00000003302 WDR77Q9BQA1 342 aaPredicted RBP9.43□□□□□ -0.9
USP28-201ENST00000003302 RTBDNQ9BSG5 229 aaPredicted RBP9.43□□□□□ -0.9
USP28-201ENST00000003302 CKLFQ9UBR5 152 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 COL5A1P20908 1838 aaPredicted RBP9.43□□□□□ -0.9
USP28-201ENST00000003302 KRBOX1C9JBD0 128 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 BCL2L11O43521 198 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 OR2J2O76002 312 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 FSTP19883 344 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 ZNF93P35789 620 aaPredicted RBP9.43□□□□□ -0.9
USP28-201ENST00000003302 RBMXP38159 391 aaKnown RBP9.43□□□□□ -0.9
USP28-201ENST00000003302 PTGDSP41222 190 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 RRADP55042 308 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 CLEC18BQ6UXF7 455 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 GALNTL5Q7Z4T8 443 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 OR1M1Q8NGA1 313 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 DCUN1D4Q92564 292 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 ZNF501Q96CX3 271 aaPredicted RBP9.43□□□□□ -0.9
USP28-201ENST00000003302 ALX4Q9H161 411 aaPredicted RBP9.43□□□□□ -0.9
USP28-201ENST00000003302 GAREM1Q9H706 876 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 PNRC2Q9NPJ4 139 aaKnown RBP9.43□□□□□ -0.9
USP28-201ENST00000003302 CACNA1DQ01668 2161 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 DBX1A6NMT0 343 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 NPIPA5E9PKD4 350 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 AQP8O94778 261 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 CRHP06850 196 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 HOXB5P09067 269 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 FAM157CP0CG43 387 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 FBLP22087 321 aaKnown RBP9.43□□□□□ -0.9
USP28-201ENST00000003302 STARP49675 285 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 EMP2P54851 167 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 SMAD4Q13485 552 aaKnown RBP9.43□□□□□ -0.9
USP28-201ENST00000003302 AKIRIN2Q53H80 203 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 LRRC18Q8N456 261 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 SLC25A43Q8WUT9 341 aaPredicted RBP9.43□□□□□ -0.9
USP28-201ENST00000003302 TMEM41AQ96HV5 264 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 NPIPA1Q9UND3 350 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 ATXN7O15265 892 aaPredicted RBP9.43□□□□□ -0.9
USP28-201ENST00000003302 ZNF208O43345 1280 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 C17orf82Q86X59 251 aaPredicted RBP9.43□□□□□ -0.9
USP28-201ENST00000003302 OR13G1Q8NGZ3 307 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 UCN2Q96RP3 112 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 SMIM3Q9BZL3 60 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 NKX6-2Q9C056 277 aaPredicted RBP9.43□□□□□ -0.9
USP28-201ENST00000003302 MED9Q9NWA0 146 aa9.43□□□□□ -0.9
USP28-201ENST00000003302 OR5H15A6NDH6 313 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 RHPN2P1A8MT19 583 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 RPS2P15880 293 aaKnown RBP9.42□□□□□ -0.9
USP28-201ENST00000003302 ASCL1P50553 236 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 RAB32Q13637 225 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 RBM39Q14498 530 aaKnown RBP9.42□□□□□ -0.9
USP28-201ENST00000003302 PCK2Q16822 640 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 Q6ZPA2 131 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 MYPOPQ86VE0 399 aaPredicted RBP9.42□□□□□ -0.9
USP28-201ENST00000003302 MRPL13Q9BYD1 178 aaKnown RBP9.42□□□□□ -0.9
USP28-201ENST00000003302 HRH4Q9H3N8 390 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 LMAN1LQ9HAT1 526 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 MCTS1Q9ULC4 181 aaKnown RBP9.42□□□□□ -0.9
USP28-201ENST00000003302 SVILO95425 2214 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 TMEM14DPA8MWL7 114 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms