RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 CSPG4P5Q96PW8 444 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 MTMR9Q96QG7 549 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 XPO6Q96QU8 1125 aaKnown RBP1.6□□□□□ -2.15
CD44-239ENST00000639002 SH3GL1Q99961 368 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 ACBD6Q9BR61 282 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 UQCC2Q9BRT2 126 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 LLPHQ9BRT6 129 aaKnown RBP1.6□□□□□ -2.15
CD44-239ENST00000639002 MED10Q9BTT4 135 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 CCDC94Q9BW85 323 aaPredicted RBP1.6□□□□□ -2.15
CD44-239ENST00000639002 BBS2Q9BXC9 721 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 SPZ1Q9BXG8 430 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 GABARAPL3Q9BY60 117 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 PIGUQ9H490 435 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 GOLPH3Q9H4A6 298 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 CSNK1G1Q9HCP0 422 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 TUBG2Q9NRH3 451 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 EMC3Q9P0I2 261 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 MYEF2Q9P2K5 600 aaKnown RBP1.6□□□□□ -2.15
CD44-239ENST00000639002 XCL2Q9UBD3 114 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 UXTQ9UBK9 157 aaPredicted RBP1.6□□□□□ -2.15
CD44-239ENST00000639002 CD84Q9UIB8 345 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 AQRO60306 1485 aaKnown RBP eCLIP1.6□□□□□ -2.15
CD44-239ENST00000639002 MUC6Q6W4X9 2439 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 SCN1AP35498 2009 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 KCNE1BA0A087WTH5 132 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 C1orf232A0A0U1RR37 186 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 INS-IGF2F8WCM5 200 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 NDUFAB1O14561 156 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 RAB29O14966 203 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 EIF3GO75821 320 aaKnown RBP eCLIP1.59□□□□□ -2.15
CD44-239ENST00000639002 ETHE1O95571 254 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 RAB3DO95716 219 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 IGHV2-5P01817 119 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 PMCHP20382 165 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 KITLGP21583 273 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 BCKDHBP21953 392 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 CD40LGP29965 261 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 S100A5P33763 92 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 ARR3P36575 388 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 TNFSF9P41273 254 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 CRATP43155 626 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 NPBWR2P48146 333 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 RORCP51449 518 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 PLTPP55058 493 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 FBXW4P57775 412 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 RPS21P63220 83 aaKnown RBP1.59□□□□□ -2.15
CD44-239ENST00000639002 LCN2P80188 198 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 MRPS22P82650 360 aaKnown RBP1.59□□□□□ -2.15
CD44-239ENST00000639002 ZNF33AQ06730 810 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 ILKQ13418 452 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 MRPL23Q16540 153 aaKnown RBP1.59□□□□□ -2.15
CD44-239ENST00000639002 TTLL9Q3SXZ7 439 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 SPIN3Q5JUX0 258 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 THEM4Q5T1C6 240 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 GPR107Q5VW38 600 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 REEP3Q6NUK4 255 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 UQCC3Q6UW78 93 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 TPGS1Q6ZTW0 290 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 NDUFAF7Q7L592 441 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 COPS6Q7L5N1 327 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 LRRC8AQ8IWT6 810 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 RIMKLAQ8IXN7 391 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 PIANPQ8IYJ0 282 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 CMTM8Q8IZV2 173 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 PUSL1Q8N0Z8 303 aaKnown RBP1.59□□□□□ -2.15
CD44-239ENST00000639002 EID2Q8N6I1 236 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 ZNF557Q8N988 423 aaPredicted RBP1.59□□□□□ -2.15
CD44-239ENST00000639002 OR4D6Q8NGJ1 314 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 OR4A15Q8NGL6 344 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 KIFAP3Q92845 792 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 NAT6Q93015 286 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 ZNF707Q96C28 371 aaPredicted RBP1.59□□□□□ -2.15
CD44-239ENST00000639002 NEURL3Q96EH8 262 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 ZNF317Q96PQ6 595 aaPredicted RBP1.59□□□□□ -2.15
CD44-239ENST00000639002 P2RX4Q99571 388 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 HINT2Q9BX68 163 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 FRMD8P1Q9BZ68 369 aaPredicted RBP1.59□□□□□ -2.15
CD44-239ENST00000639002 PRRG3Q9BZD7 231 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 RAB1BQ9H0U4 201 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 LINC00597Q9H2U6 94 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 SAV1Q9H4B6 383 aaPredicted RBP1.59□□□□□ -2.15
CD44-239ENST00000639002 PSTPIP2Q9H939 334 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 C12orf10Q9HB07 376 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 ZNF302Q9NR11 478 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 GPATCH2LQ9NWQ4 482 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 PSMD13Q9UNM6 376 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 KPTNQ9Y664 436 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 S4R3C0 116 aa1.59□□□□□ -2.15
CD44-239ENST00000639002 IGLV3-22A0A075B6J6 115 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 A0A0A6YYH2 397 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 TRAV39A0A0B4J263 110 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 A0A1W2PPE3 182 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 A0A1W2PRF3 423 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 A0A1W2PRM7 423 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 A6NJ64 397 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 SMIM23A6NLE4 172 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 GOSR2O14653 212 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 EIF3HO15372 352 aaKnown RBP eCLIP1.58□□□□□ -2.16
CD44-239ENST00000639002 SLC19A2O60779 497 aa1.58□□□□□ -2.16
CD44-239ENST00000639002 FCN3O75636 299 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms