RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 COLCA1Q6ZS62 124 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 FAM57BQ71RH2 274 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 UTS2BQ765I0 119 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 CD163Q86VB7 1156 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 COMMD2Q86X83 199 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 C9orf106Q8NAJ2 232 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 OR51E1Q8TCB6 317 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 C15orf40Q8WUR7 153 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 RAB40AQ8WXH6 277 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 AKAP1Q92667 903 aaKnown RBP eCLIP9.23□□□□□ -0.93
CLN3-248ENST00000636355 HTRA1Q92743 480 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 BCL2L2Q92843 193 aaPredicted RBP9.23□□□□□ -0.93
CLN3-248ENST00000636355 SPSB4Q96A44 273 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 DIRAS2Q96HU8 199 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 TECTBQ96PL2 329 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 C1QTNF5Q9BXJ0 243 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 SLC25A18Q9H1K4 315 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 C12orf49Q9H741 205 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 NEK6Q9HC98 313 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 TMEM138Q9NPI0 162 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 GPR84Q9NQS5 396 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 PLSCR4Q9NRQ2 329 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 STEAP1Q9UHE8 339 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 V9GYS6 101 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 ATRXP46100 2492 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 PKD1L2Q7Z442 2459 aa9.23□□□□□ -0.93
CLN3-248ENST00000636355 F5H5K5 113 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 PRRG2O14669 202 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 SULT1B1O43704 296 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 IL2RAP01589 272 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 TPOP07202 933 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 TMIGD3P0DMS9 266 aaPredicted RBP9.22□□□□□ -0.93
CLN3-248ENST00000636355 ADRA2CP18825 462 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 RAB3AP20336 220 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 HOXC12P31275 282 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 MNDAP41218 407 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 CAV3P56539 151 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 PER3P56645 1201 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 KLRB1Q12918 225 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 OR8B8Q15620 311 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 GSG1Q2KHT4 349 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 ODF4Q2M2E3 257 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 RSPO1Q2MKA7 263 aaPredicted RBP9.22□□□□□ -0.93
CLN3-248ENST00000636355 SLC25A35Q3KQZ1 300 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 HACD4Q5VWC8 232 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 FAM166AQ6J272 317 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 ZNF585AQ6P3V2 769 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 CNIH2Q6PI25 160 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 BEND4Q6ZU67 534 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 SSX8Q7RTT4 187 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 RDH10Q8IZV5 341 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 GCNT2Q8N0V5 402 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 GABRG1Q8N1C3 465 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 ZNF433Q8N7K0 673 aaPredicted RBP9.22□□□□□ -0.93
CLN3-248ENST00000636355 FAM169BQ8N8A8 192 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 SAMD12Q8N8I0 201 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 OR5M9Q8NGP3 310 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 OR1J2Q8NGS2 313 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 ZNF671Q8TAW3 534 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 SETD6Q8TBK2 473 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 LGALS14Q8TCE9 139 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 PTX4Q96A99 478 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 SORCS2Q96PQ0 1159 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 GFI1Q99684 422 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 USB1Q9BQ65 265 aaKnown RBP9.22□□□□□ -0.93
CLN3-248ENST00000636355 SOSTQ9BQB4 213 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 CHST5Q9GZS9 411 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 ABCG5Q9H222 651 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 METTL17Q9H7H0 456 aaPredicted RBP9.22□□□□□ -0.93
CLN3-248ENST00000636355 RNF121Q9H920 327 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 LIN7BQ9HAP6 207 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 BRD7Q9NPI1 651 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 B3GNT2Q9NY97 397 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 COMMD3Q9UBI1 195 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 PRSS50Q9UI38 385 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 PROCRQ9UNN8 238 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 ZNF835Q9Y2P0 537 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 FAM215AQ9Y5M1 114 aa9.22□□□□□ -0.93
CLN3-248ENST00000636355 PRRC2CQ9Y520 2896 aaKnown RBP9.22□□□□□ -0.93
CLN3-248ENST00000636355 A0A1W2PPK0 400 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 SMIM30A4D0T7 59 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 FABP12A6NFH5 140 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 VGLL3A8MV65 326 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 J3QRK9 145 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 HPGDSO60760 199 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 TNFSF13O75888 250 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 SCGNO76038 276 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 CGAP01215 116 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 HLA-DQB1P01920 261 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 ALDOBP05062 364 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 FAM87AP0C7U9 286 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 EDN3P14138 238 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 BDKRB2P30411 391 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 CEACAM8P31997 349 aaPredicted RBP9.21□□□□□ -0.94
CLN3-248ENST00000636355 GNALP38405 381 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 DEFA1P59665 94 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 DEFA3P59666 94 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 MRPS10P82664 201 aaKnown RBP9.21□□□□□ -0.94
CLN3-248ENST00000636355 FAM189A2Q15884 450 aa9.21□□□□□ -0.94
CLN3-248ENST00000636355 RAB11BQ15907 218 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms