RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 PHYHO14832 338 aa15.48■□□□□ 0.07
CLN3-243ENST00000635973 TIMM8AO60220 97 aaPredicted RBP15.48■□□□□ 0.07
CLN3-243ENST00000635973 SLC2A1P11166 492 aa15.48■□□□□ 0.07
CLN3-243ENST00000635973 NAT2P11245 290 aa15.48■□□□□ 0.07
CLN3-243ENST00000635973 ALOX5APP20292 161 aa15.48■□□□□ 0.07
CLN3-243ENST00000635973 OTX1P32242 354 aaPredicted RBP15.48■□□□□ 0.07
CLN3-243ENST00000635973 SLC25A30Q5SVS4 291 aa15.48■□□□□ 0.07
CLN3-243ENST00000635973 RHOUQ7L0Q8 258 aa15.48■□□□□ 0.07
CLN3-243ENST00000635973 SETD9Q8NE22 299 aa15.48■□□□□ 0.07
CLN3-243ENST00000635973 OR10H4Q8NGA5 316 aa15.48■□□□□ 0.07
CLN3-243ENST00000635973 RNFT2Q96EX2 444 aa15.48■□□□□ 0.07
CLN3-243ENST00000635973 TBX5Q99593 518 aa15.48■□□□□ 0.07
CLN3-243ENST00000635973 BEX2Q9BXY8 128 aa15.48■□□□□ 0.07
CLN3-243ENST00000635973 TPK1Q9H3S4 243 aa15.48■□□□□ 0.07
CLN3-243ENST00000635973 MS4A5Q9H3V2 200 aa15.48■□□□□ 0.07
CLN3-243ENST00000635973 COPS3Q9UNS2 423 aa15.48■□□□□ 0.07
CLN3-243ENST00000635973 A0A096LNT2 108 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 LOC390937A0A1W2PQ73 354 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 PSMD9O00233 223 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 TBX1O43435 398 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 CLIC3O95833 236 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 IGHV3-13P01766 116 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 CAPGP40121 348 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 MTNR1AP48039 350 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 GZMKP49863 264 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 CXCR4P61073 352 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 HLXQ14774 488 aaPredicted RBP15.47■□□□□ 0.07
CLN3-243ENST00000635973 SNAI3Q3KNW1 292 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 ZNF691Q5VV52 312 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 ZNF322Q6U7Q0 402 aaPredicted RBP15.47■□□□□ 0.07
CLN3-243ENST00000635973 MRPL21Q7Z2W9 205 aaKnown RBP15.47■□□□□ 0.07
CLN3-243ENST00000635973 NAA40Q86UY6 237 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 ZNF540Q8NDQ6 660 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 SPATA3Q8NHX4 192 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 CMBLQ96DG6 245 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 MROQ9BYG7 248 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 SP140LQ9H930 580 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 BRD7Q9NPI1 651 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 LRP12Q9Y561 859 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 COL6A5A8TX70 2615 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 ATRQ13535 2644 aa15.47■□□□□ 0.07
CLN3-243ENST00000635973 ATP6V1G2O95670 118 aa15.46■□□□□ 0.07
CLN3-243ENST00000635973 RAC2P15153 192 aa15.46■□□□□ 0.07
CLN3-243ENST00000635973 GABRB1P18505 474 aa15.46■□□□□ 0.07
CLN3-243ENST00000635973 ZNF121P58317 390 aaPredicted RBP15.46■□□□□ 0.07
CLN3-243ENST00000635973 IL18R1Q13478 541 aa15.46■□□□□ 0.07
CLN3-243ENST00000635973 ZMAT1Q5H9K5 638 aa15.46■□□□□ 0.07
CLN3-243ENST00000635973 COLCA1Q6ZS62 124 aa15.46■□□□□ 0.07
CLN3-243ENST00000635973 FAM57BQ71RH2 274 aa15.46■□□□□ 0.07
CLN3-243ENST00000635973 ZCCHC24Q8N2G6 241 aaKnown RBP15.46■□□□□ 0.07
CLN3-243ENST00000635973 RHOXF1Q8NHV9 184 aa15.46■□□□□ 0.07
CLN3-243ENST00000635973 NRG4Q8WWG1 115 aa15.46■□□□□ 0.07
CLN3-243ENST00000635973 REPIN1Q9BWE0 567 aaKnown RBP15.46■□□□□ 0.07
CLN3-243ENST00000635973 SHARPINQ9H0F6 387 aa15.46■□□□□ 0.07
CLN3-243ENST00000635973 NIPAL2Q9H841 368 aa15.46■□□□□ 0.07
CLN3-243ENST00000635973 LPAR3Q9UBY5 353 aa15.46■□□□□ 0.07
CLN3-243ENST00000635973 CGGBP1Q9UFW8 167 aaPredicted RBP15.46■□□□□ 0.07
CLN3-243ENST00000635973 PURGQ9UJV8 347 aaKnown RBP15.46■□□□□ 0.07
CLN3-243ENST00000635973 RRP15Q9Y3B9 282 aaKnown RBP15.46■□□□□ 0.07
CLN3-243ENST00000635973 ANK3Q12955 4377 aaKnown RBP15.45■□□□□ 0.06
CLN3-243ENST00000635973 RNF212BA8MTL3 300 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 H0YAE9 185 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 OR2T7P0C7T2 308 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 FAM157CP0CG43 387 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 IGHV4-31P0DP07 118 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 ZNF16P17020 682 aaPredicted RBP15.45■□□□□ 0.06
CLN3-243ENST00000635973 NR4A2P43354 598 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 RIDAP52758 137 aaKnown RBP15.45■□□□□ 0.06
CLN3-243ENST00000635973 PSMA6P60900 246 aaKnown RBP15.45■□□□□ 0.06
CLN3-243ENST00000635973 ZNF91Q05481 1191 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 PSG7Q13046 419 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 RIPK1Q13546 671 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 GFOD2Q3B7J2 385 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 FBXW12Q6X9E4 464 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 PGAP1Q75T13 922 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 ZNF679Q8IYX0 411 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 OR5AS1Q8N127 324 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 RFLNBQ8N5W9 214 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 OR2T27Q8NH04 317 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 PGAM5Q96HS1 289 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 OR8B4Q96RC9 309 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 OR10A2Q9H208 303 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 CYSLTR2Q9NS75 346 aa15.45■□□□□ 0.06
CLN3-243ENST00000635973 FBN1P35555 2871 aaKnown RBP15.45■□□□□ 0.06
CLN3-243ENST00000635973 RRP9O43818 475 aaKnown RBP15.44■□□□□ 0.06
CLN3-243ENST00000635973 LMX1BO60663 402 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 ZNF254O75437 659 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 KRT8P05787 483 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 DBTP11182 482 aaKnown RBP15.44■□□□□ 0.06
CLN3-243ENST00000635973 SELEP16581 610 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 LIPAP38571 399 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 ZNF81P51508 661 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 AQP4P55087 323 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 ACTC1P68032 377 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 ACTA1P68133 377 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 ADARB1P78563 741 aaKnown RBP15.44■□□□□ 0.06
CLN3-243ENST00000635973 EGR3Q06889 387 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 GK2Q14410 553 aaPredicted RBP15.44■□□□□ 0.06
CLN3-243ENST00000635973 TIGD6Q17RP2 521 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 ZNF829Q3KNS6 432 aaPredicted RBP15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms