RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

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Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 P4HTMQ9NXG6 502 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 SPEF1Q9Y4P9 236 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 PCSK5Q92824 1860 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 MAP1BP46821 2468 aaKnown RBP9.38□□□□□ -0.91
CUX1-221ENST00000622516 RIF1Q5UIP0 2472 aaKnown RBP9.38□□□□□ -0.91
CUX1-221ENST00000622516 PINLYPA6NC86 204 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 M0R296 226 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 ZNHIT1O43257 154 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 P04436 131 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 SP9P0CG40 484 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 FSTP19883 344 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 MRPS10P82664 201 aaKnown RBP9.38□□□□□ -0.91
CUX1-221ENST00000622516 UNC119Q13432 240 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 HIST3H3Q16695 136 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 NKPD1Q17RQ9 610 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 OLFML2AQ68BL7 652 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 NLRC3Q7RTR2 1065 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 FGD2Q7Z6J4 655 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 ADGRE4PQ86SQ3 457 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 CD163Q86VB7 1156 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 ANGPTL5Q86XS5 388 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 BEST3Q8N1M1 668 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 GALNT16Q8N428 558 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 PAQR4Q8N4S7 273 aaPredicted RBP9.38□□□□□ -0.91
CUX1-221ENST00000622516 MEIOBQ8N635 442 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 GVQW1Q8N7I0 195 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 SH2D2AQ9NP31 389 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 DLL4Q9NR61 685 aa9.38□□□□□ -0.91
CUX1-221ENST00000622516 EIF3KQ9UBQ5 218 aaKnown RBP9.38□□□□□ -0.91
CUX1-221ENST00000622516 NAP1L6A6NFF2 107 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 C9orf172C9J069 976 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 CBR3O75828 277 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 NDUFB6O95139 128 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 CD63P08962 238 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 LIPCP11150 499 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 ZNF17P17021 662 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 HTR2BP41595 481 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 SUCLG1P53597 346 aaKnown RBP9.37□□□□□ -0.91
CUX1-221ENST00000622516 C2orf68Q2NKX9 166 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 ACER2Q5QJU3 275 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 TMEM81Q6P7N7 255 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 LIX1LQ8IVB5 337 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 ZNF101Q8IZC7 436 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 OR9K2Q8NGE7 335 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 THRSPQ92748 146 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 NICN1Q9BSH3 213 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 ZNF436Q9C0F3 470 aaPredicted RBP9.37□□□□□ -0.91
CUX1-221ENST00000622516 MGAT4CQ9UBM8 478 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 MEIKINA0A087WXM9 373 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 TLX3O43711 291 aaPredicted RBP9.37□□□□□ -0.91
CUX1-221ENST00000622516 IGHV3-9P01782 118 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 GNB3P16520 340 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 ZNF20P17024 532 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 DNASE1P24855 282 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 ZNF93P35789 620 aaPredicted RBP9.37□□□□□ -0.91
CUX1-221ENST00000622516 GUCA1AP43080 201 aaPredicted RBP9.37□□□□□ -0.91
CUX1-221ENST00000622516 PSMA6P60900 246 aaKnown RBP9.37□□□□□ -0.91
CUX1-221ENST00000622516 SCGB2B2Q4G0G5 96 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 AWAT2Q6E213 333 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 OR52W1Q6IF63 320 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 STEAP1BQ6NZ63 245 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 GLDNQ6ZMI3 551 aaPredicted RBP9.37□□□□□ -0.91
CUX1-221ENST00000622516 C17orf107Q6ZR85 190 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 TMED4Q7Z7H5 227 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 ZIC4Q8N9L1 334 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 CLEC1AQ8NC01 280 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 ADPRHL1Q8NDY3 354 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 OR5D14Q8NGL3 314 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 NUDCD2Q8WVJ2 157 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 SORCS2Q96PQ0 1159 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 HES7Q9BYE0 225 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 BANF2Q9H503 90 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 SLA2Q9H6Q3 261 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 TMEM138Q9NPI0 162 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 RHBDD3Q9Y3P4 386 aa9.37□□□□□ -0.91
CUX1-221ENST00000622516 B4E171 279 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 H3BUI4 141 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 TMEM127O75204 238 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 PMS2P2O95744 297 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 GP1BAP07359 652 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 VSIG8P0DPA2 414 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 RAB3AP20336 220 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 ANGPT1Q15389 498 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 ELFN2Q5R3F8 820 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 DNM1P46Q6ZS02 220 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 LYPD6Q86Y78 171 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 GABRG1Q8N1C3 465 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 TMEM104Q8NE00 496 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 OR8H1Q8NGG4 311 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 GPX8Q8TED1 209 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 THOC3Q96J01 351 aaKnown RBP9.36□□□□□ -0.91
CUX1-221ENST00000622516 ALKBH3Q96Q83 286 aaPredicted RBP9.36□□□□□ -0.91
CUX1-221ENST00000622516 MEGF11A6BM72 1044 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 CXCL13O43927 109 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 CSF1P09603 554 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 M6PRP20645 277 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 OR3A4PP47883 348 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 RAG2P55895 527 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 SRYQ05066 204 aa9.36□□□□□ -0.91
CUX1-221ENST00000622516 METTL11BQ5VVY1 283 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 328.1 ms