RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 MRPL40Q9NQ50 206 aaKnown RBP2.76□□□□□ -1.97
SMCHD1-213ENST00000609587 DYRK4Q9NR20 520 aa2.76□□□□□ -1.97
SMCHD1-213ENST00000609587 NECAP2Q9NVZ3 263 aa2.76□□□□□ -1.97
SMCHD1-213ENST00000609587 ZNF226Q9NYT6 803 aa2.76□□□□□ -1.97
SMCHD1-213ENST00000609587 PCYOX1Q9UHG3 505 aa2.76□□□□□ -1.97
SMCHD1-213ENST00000609587 GNPTGQ9UJJ9 305 aa2.76□□□□□ -1.97
SMCHD1-213ENST00000609587 TBL2Q9Y4P3 447 aaKnown RBP2.76□□□□□ -1.97
SMCHD1-213ENST00000609587 TSSC4Q9Y5U2 329 aaPredicted RBP2.76□□□□□ -1.97
SMCHD1-213ENST00000609587 KPTNQ9Y664 436 aa2.76□□□□□ -1.97
SMCHD1-213ENST00000609587 RLFQ13129 1914 aa2.76□□□□□ -1.97
SMCHD1-213ENST00000609587 MSH6P52701 1360 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 IGHV3-64DA0A0J9YX35 117 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 SLC5A10A0PJK1 596 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 SMCO3A2RU48 225 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 FUOMA2VDF0 154 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 SMCO2A6NFE2 343 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 E7EWF7 191 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 F8VP50 259 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 H0YJX3 145 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 H3BNH8 94 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 PEX7O00628 323 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 RFXANKO14593 260 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 GOSR2O14653 212 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 CLOCKO15516 846 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 SOX15O60248 233 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 OR2J3O76001 311 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 RAB3DO95716 219 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 KRT16P08779 473 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 UBCP0CG48 685 aaKnown RBP2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 ADRB3P13945 408 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 ZNF7P17097 686 aaPredicted RBP2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 IFNA8P32881 189 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 AQP2P41181 271 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 NMUP48645 174 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 ACLYP53396 1101 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 CEBPGP53567 150 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 FGF8P55075 233 aaPredicted RBP2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 FBXW4P57775 412 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 AP3S2P59780 193 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 KCNJ2P63252 427 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 MADCAM1Q13477 382 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 AQP6Q13520 282 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 UAP1Q16222 522 aaPredicted RBP2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 TNXAQ16473 311 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 COA6Q5JTJ3 125 aaKnown RBP2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 GPR107Q5VW38 600 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 Q6P435 159 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 TMPRSS11AQ6ZMR5 421 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 C19orf35Q6ZS72 473 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 Q6ZSR3 168 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 SLC25A48Q6ZT89 311 aaKnown RBP2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 TAC4Q86UU9 113 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 MMAAQ8IVH4 418 aaKnown RBP2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 ZNF786Q8N393 782 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 TTC29Q8NA56 475 aaPredicted RBP2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 TMEM239Q8WW34 195 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 NTAN1Q96AB6 310 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 CSPG4P5Q96PW8 444 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 RARRES2Q99969 163 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 C7orf50Q9BRJ6 194 aaKnown RBP2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 C1orf198Q9H425 327 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 TRIM45Q9H8W5 580 aaPredicted RBP2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 ZNF223Q9UK11 482 aaPredicted RBP2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 FLVCR2Q9UPI3 526 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 GTF3C1Q12789 2109 aa2.75□□□□□ -1.97
SMCHD1-213ENST00000609587 USP42Q9H9J4 1324 aaKnown RBP2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 IGKV6D-21A0A0A0MT36 114 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 TRBV9A0A0B4J1U6 114 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 A0A1B0GTI1 187 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 TMEM238C9JI98 176 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 H3BN98 237 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 TMX2-CTNND1H3BSU7 103 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 DYNC1I1O14576 645 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 LIN7AO14910 233 aaPredicted RBP2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 SUPT3HO75486 399 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 ETHE1O95571 254 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 FABP1P07148 127 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 KRT7P08729 469 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 CALM1P0DP23 149 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 CALM2P0DP24 149 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 CALM3P0DP25 149 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 ATF6P18850 670 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 M6PRP20645 277 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 CSKP41240 450 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 MAGEA2P43356 314 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 UQCRFS1P47985 274 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 CRISP3P54108 245 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 UGT2B15P54855 530 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 REEP5Q00765 189 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 ZNF33AQ06730 810 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 MED21Q13503 144 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 GUCA2BQ16661 112 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 TMEM183BQ1AE95 376 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 LY6G6FQ5SQ64 297 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 SYPL2Q5VXT5 272 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 RESP18Q5W5W9 173 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 ULK3Q6PHR2 472 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 LINC00336Q6ZUF6 198 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 LHFPL3Q86UP9 236 aa2.74□□□□□ -1.97
SMCHD1-213ENST00000609587 TMEM183AQ8IXX5 376 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms