RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 PPOXP50336 477 aa12.3□□□□□ -0.44
VRK3-213ENST00000597215 MMP16P51512 607 aa12.3□□□□□ -0.44
VRK3-213ENST00000597215 PSG7Q13046 419 aa12.3□□□□□ -0.44
VRK3-213ENST00000597215 MED21Q13503 144 aa12.3□□□□□ -0.44
VRK3-213ENST00000597215 HLXQ14774 488 aaPredicted RBP12.3□□□□□ -0.44
VRK3-213ENST00000597215 TIGD6Q17RP2 521 aa12.3□□□□□ -0.44
VRK3-213ENST00000597215 DEFB113Q30KQ7 82 aa12.3□□□□□ -0.44
VRK3-213ENST00000597215 CDONQ4KMG0 1287 aa12.3□□□□□ -0.44
VRK3-213ENST00000597215 GLYATL3Q5SZD4 288 aa12.3□□□□□ -0.44
VRK3-213ENST00000597215 KCTD20Q7Z5Y7 419 aa12.3□□□□□ -0.44
VRK3-213ENST00000597215 GGHQ92820 318 aa12.3□□□□□ -0.44
VRK3-213ENST00000597215 TRMT61AQ96FX7 289 aaKnown RBP12.3□□□□□ -0.44
VRK3-213ENST00000597215 ALG8Q9BVK2 526 aa12.3□□□□□ -0.44
VRK3-213ENST00000597215 MOB1AQ9H8S9 216 aa12.3□□□□□ -0.44
VRK3-213ENST00000597215 FAM206AQ9NX38 181 aa12.3□□□□□ -0.44
VRK3-213ENST00000597215 MYEF2Q9P2K5 600 aaKnown RBP12.3□□□□□ -0.44
VRK3-213ENST00000597215 CGGBP1Q9UFW8 167 aaPredicted RBP12.3□□□□□ -0.44
VRK3-213ENST00000597215 PSORS1C1Q9UIG5 152 aa12.3□□□□□ -0.44
VRK3-213ENST00000597215 PURGQ9UJV8 347 aaKnown RBP12.3□□□□□ -0.44
VRK3-213ENST00000597215 GNG8Q9UK08 70 aa12.3□□□□□ -0.44
VRK3-213ENST00000597215 R4GMQ9 66 aa12.3□□□□□ -0.44
VRK3-213ENST00000597215 NOTCH2Q04721 2471 aa12.3□□□□□ -0.44
VRK3-213ENST00000597215 PLSCR5A0PG75 271 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 C5orf63A6NC05 138 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 LOC110117498-PIK3R3F6TDL0 507 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 SLC1A7O00341 560 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 RPP14O95059 124 aaKnown RBP12.29□□□□□ -0.44
VRK3-213ENST00000597215 MT-ND5P03915 603 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 SELEP16581 610 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 MYL12AP19105 171 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 KITLGP21583 273 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 ANOS1P23352 680 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 CFL1P23528 166 aaKnown RBP12.29□□□□□ -0.44
VRK3-213ENST00000597215 CDKN1AP38936 164 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 ALDH3B1P43353 468 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 GK2Q14410 553 aaPredicted RBP12.29□□□□□ -0.44
VRK3-213ENST00000597215 TP53I3Q53FA7 332 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 LIPNQ5VXI9 398 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 PGAP1Q75T13 922 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 LHFPL3Q86UP9 236 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 EGFL6Q8IUX8 553 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 OR8B12Q8NGG6 310 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 OR2AE1Q8NHA4 323 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 SPSB4Q96A44 273 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 TMEM80Q96HE8 168 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 RHNO1Q9BSD3 238 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 MS4A5Q9H3V2 200 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 RGCCQ9H4X1 137 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 ZNF701Q9NV72 531 aaPredicted RBP12.29□□□□□ -0.44
VRK3-213ENST00000597215 ERVK13-1Q9NX77 482 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 SCN3BQ9NY72 215 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 GTF2A1LQ9UNN4 478 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 DIMT1Q9UNQ2 313 aaKnown RBP12.29□□□□□ -0.44
VRK3-213ENST00000597215 EXOSC1Q9Y3B2 195 aaKnown RBP12.29□□□□□ -0.44
VRK3-213ENST00000597215 USF3Q68DE3 2245 aa12.29□□□□□ -0.44
VRK3-213ENST00000597215 SRSF10O75494 262 aaKnown RBP12.28□□□□□ -0.44
VRK3-213ENST00000597215 ERCC1P07992 297 aaPredicted RBP12.28□□□□□ -0.44
VRK3-213ENST00000597215 ADRA2AP08913 450 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 PAX1P15863 534 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 LIPAP38571 399 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 PTH2RP49190 550 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 ZNF92Q03936 586 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 MFGE8Q08431 387 aaPredicted RBP12.28□□□□□ -0.44
VRK3-213ENST00000597215 ST3GAL4Q11206 333 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 GFOD2Q3B7J2 385 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 ALKBH6Q3KRA9 238 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 ZMAT1Q5H9K5 638 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 TMEM255AQ5JRV8 349 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 BCL2L15Q5TBC7 163 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 AHSA2Q719I0 299 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 SYS1Q8N2H4 156 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 STX19Q8N4C7 294 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 ZNF540Q8NDQ6 660 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 REEP6Q96HR9 211 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 C4orf36Q96KX1 117 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 SIGLEC11Q96RL6 698 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 VRK1Q99986 396 aaPredicted RBP12.28□□□□□ -0.44
VRK3-213ENST00000597215 REPIN1Q9BWE0 567 aaKnown RBP12.28□□□□□ -0.44
VRK3-213ENST00000597215 GSX2Q9BZM3 304 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 PBOV1Q9GZY1 135 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 CYSLTR2Q9NS75 346 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 ACOXLQ9NUZ1 547 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 CHCHD3Q9NX63 227 aaKnown RBP12.28□□□□□ -0.44
VRK3-213ENST00000597215 NUFIP1Q9UHK0 495 aaKnown RBP12.28□□□□□ -0.44
VRK3-213ENST00000597215 ZNF391Q9UJN7 358 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 SNX5Q9Y5X3 404 aa12.28□□□□□ -0.44
VRK3-213ENST00000597215 A0A0U1RQV5 110 aa12.27□□□□□ -0.45
VRK3-213ENST00000597215 IQCF6A8MYZ5 107 aa12.27□□□□□ -0.45
VRK3-213ENST00000597215 J3QLW9 94 aa12.27□□□□□ -0.45
VRK3-213ENST00000597215 DENRO43583 198 aaKnown RBP12.27□□□□□ -0.45
VRK3-213ENST00000597215 PNPP00491 289 aa12.27□□□□□ -0.45
VRK3-213ENST00000597215 CCDC159P0C7I6 412 aa12.27□□□□□ -0.45
VRK3-213ENST00000597215 ZNF19P17023 458 aa12.27□□□□□ -0.45
VRK3-213ENST00000597215 MMP15P51511 669 aa12.27□□□□□ -0.45
VRK3-213ENST00000597215 ATP5J2P56134 94 aa12.27□□□□□ -0.45
VRK3-213ENST00000597215 OR12D2P58182 307 aa12.27□□□□□ -0.45
VRK3-213ENST00000597215 OR2T2Q6IF00 324 aa12.27□□□□□ -0.45
VRK3-213ENST00000597215 LRRC75A-AS1Q8N1F1 130 aa12.27□□□□□ -0.45
VRK3-213ENST00000597215 SPRYD4Q8WW59 207 aaPredicted RBP12.27□□□□□ -0.45
VRK3-213ENST00000597215 RORBQ92753 470 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms