RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 UPK1BO75841 260 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 IL18BPO95998 194 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 IGLV3-1P01715 115 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 CD79AP11912 226 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 ZNF20P17024 532 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 GNALP38405 381 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 KIR2DL2P43627 348 aaPredicted RBP9.17□□□□□ -0.94
SS18-217ENST00000580958 EVX1P49640 407 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 PSMD7P51665 324 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 CLDN12P56749 244 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 GUCA2AQ02747 115 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 SPOCK1Q08629 439 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 FOXF2Q12947 444 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 SF3B4Q15427 424 aaKnown RBP eCLIP9.17□□□□□ -0.94
SS18-217ENST00000580958 ZNF79Q15937 498 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 SNAI3Q3KNW1 292 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 HIKESHIQ53FT3 197 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 KRTCAP3Q53RY4 240 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 ZNF324BQ6AW86 544 aaPredicted RBP9.17□□□□□ -0.94
SS18-217ENST00000580958 RTL6Q6ICC9 239 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 CD163Q86VB7 1156 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 CISD2Q8N5K1 135 aaKnown RBP9.17□□□□□ -0.94
SS18-217ENST00000580958 DTX3Q8N9I9 347 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 OR4M1Q8NGD0 313 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 OR51A2Q8NGJ7 313 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 OR6K3Q8NGY3 331 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 SNRNP27Q8WVK2 155 aaKnown RBP9.17□□□□□ -0.94
SS18-217ENST00000580958 BCL2L2Q92843 193 aaPredicted RBP9.17□□□□□ -0.94
SS18-217ENST00000580958 ADAT3Q96EY9 351 aaPredicted RBP9.17□□□□□ -0.94
SS18-217ENST00000580958 LYZL4Q96KX0 146 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 SOSTQ9BQB4 213 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 SRRQ9GZT4 340 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 OR10A2Q9H208 303 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 EXTL2Q9UBQ6 330 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 NCOR2Q9Y618 2525 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 PRR14LQ5THK1 2151 aa9.17□□□□□ -0.94
SS18-217ENST00000580958 HEATR1Q9H583 2144 aaKnown RBP9.17□□□□□ -0.94
SS18-217ENST00000580958 A0A0U1RQV5 110 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 MBD3L4A6NDZ8 208 aaPredicted RBP9.16□□□□□ -0.94
SS18-217ENST00000580958 MBD3L3A6NE82 208 aaPredicted RBP9.16□□□□□ -0.94
SS18-217ENST00000580958 MBD3L5A6NJ08 208 aaPredicted RBP9.16□□□□□ -0.94
SS18-217ENST00000580958 WDR1O75083 606 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 LCATP04180 440 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 CALCBP10092 127 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 GABRA1P14867 456 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 IGHV1-2P23083 117 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 ARR3P36575 388 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 DDOSTP39656 456 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 TDGF1P3P51864 188 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 PER3P56645 1201 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 P2RY14Q15391 338 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 RAB11BQ15907 218 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 ZNF181Q2M3W8 571 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 TBRG1Q3YBR2 411 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 PYDC2Q56P42 97 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 ANKRD16Q6P6B7 361 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 XKRXQ6PP77 449 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 METAP1DQ6UB28 335 aaPredicted RBP9.16□□□□□ -0.94
SS18-217ENST00000580958 SEM1Q6ZVN7 128 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 LRRC28Q86X40 367 aaPredicted RBP9.16□□□□□ -0.94
SS18-217ENST00000580958 OR8H2Q8N162 312 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 PLPP7Q8NBV4 271 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 CPEB3Q8NE35 698 aaKnown RBP9.16□□□□□ -0.94
SS18-217ENST00000580958 OR1M1Q8NGA1 313 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 OR14K1Q8NGZ2 314 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 MBD3L2Q8NHZ7 208 aaPredicted RBP9.16□□□□□ -0.94
SS18-217ENST00000580958 FAM57AQ8TBR7 257 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 ZCCHC14Q8WYQ9 949 aaKnown RBP9.16□□□□□ -0.94
SS18-217ENST00000580958 SGK3Q96BR1 496 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 NKX3-1Q99801 234 aaPredicted RBP9.16□□□□□ -0.94
SS18-217ENST00000580958 B3GNT2Q9NY97 397 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 CGGBP1Q9UFW8 167 aaPredicted RBP9.16□□□□□ -0.94
SS18-217ENST00000580958 OR5V1Q9UGF6 321 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 STEAP1Q9UHE8 339 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 SPATA2Q9UM82 520 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 FAM215AQ9Y5M1 114 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 TLN1Q9Y490 2541 aaKnown RBP9.16□□□□□ -0.94
SS18-217ENST00000580958 CFAP47Q6ZTR5 3102 aa9.16□□□□□ -0.94
SS18-217ENST00000580958 RP1L1Q8IWN7 2480 aaPredicted RBP9.15□□□□□ -0.94
SS18-217ENST00000580958 LOC100509620A0A075B734 347 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 A0A1B0GVG6 124 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 MEGF11A6BM72 1044 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 FIGNL2A6NMB9 653 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 TMEM127O75204 238 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 UBL3O95164 117 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 APOA1P02647 267 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 TMIGD3P0DMS9 266 aaPredicted RBP9.15□□□□□ -0.94
SS18-217ENST00000580958 COX5BP10606 129 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 ZNF12P17014 697 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 BDKRB2P30411 391 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 PTGER4P35408 488 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 RAB1AP62820 205 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 IL18Q14116 193 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 PRR30Q53SZ7 412 aaPredicted RBP9.15□□□□□ -0.94
SS18-217ENST00000580958 UBE2NLQ5JXB2 153 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 GLYATL3Q5SZD4 288 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 STEAP3Q658P3 488 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 GLT8D1Q68CQ7 371 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 LYSMD2Q8IV50 215 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 SERPINA12Q8IW75 414 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms