RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 UPK1BO75841 260 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 TNFSF13O75888 250 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 MYO1DO94832 1006 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 AHSA1O95433 338 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 TTC4O95801 387 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 PTHP01270 115 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 HSPB1P04792 205 aaKnown RBP1.55□□□□□ -2.16
CHD3-217ENST00000574022 FABP3P05413 133 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 HSPD1P10809 573 aaKnown RBP1.55□□□□□ -2.16
CHD3-217ENST00000574022 THRAP10827 490 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 CD1EP15812 388 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 CAPN2P17655 700 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 HLA-GP17693 338 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 RAB3AP20336 220 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 CNR1P21554 472 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 GABRR1P24046 479 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 LOXP28300 417 aaPredicted RBP1.55□□□□□ -2.16
CHD3-217ENST00000574022 MYCNOSP40205 109 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 CDKN2BP42772 138 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 PPICP45877 212 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 GALR1P47211 349 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 RGS19P49795 217 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 P2RX1P51575 399 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 NCBP2P52298 156 aaKnown RBP eCLIP1.55□□□□□ -2.16
CHD3-217ENST00000574022 EMP2P54851 167 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 MTPNP58546 118 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 TIMM10P62072 90 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 PPP1CBP62140 327 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 RPS23P62266 143 aaKnown RBP1.55□□□□□ -2.16
CHD3-217ENST00000574022 CTAG1AP78358 180 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 SLC35A1P78382 337 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 ITGB3BPQ13352 177 aaPredicted RBP1.55□□□□□ -2.16
CHD3-217ENST00000574022 DMC1Q14565 340 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 GUSBP1Q15486 140 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 ZNHIT3Q15649 155 aaPredicted RBP1.55□□□□□ -2.16
CHD3-217ENST00000574022 GUCA2BQ16661 112 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 RFX4Q33E94 735 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 HIGD2BQ4VC39 106 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 TFDP3Q5H9I0 405 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 IDNKQ5T6J7 187 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 EPGNQ6UW88 154 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 FAM151BQ6UXP7 276 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 ZNF493Q6ZR52 646 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 RNF165Q6ZSG1 346 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 TPGS1Q6ZTW0 290 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 Q6ZVH6 145 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 STRADAQ7RTN6 431 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 MRPL52Q86TS9 123 aaKnown RBP1.55□□□□□ -2.16
CHD3-217ENST00000574022 P2RY8Q86VZ1 359 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 TMEM25Q86YD3 366 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 FUNDC1Q8IVP5 155 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 SLC30A8Q8IWU4 369 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 BBS7Q8IWZ6 715 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 ATPAF2Q8N5M1 289 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 RNF10Q8N5U6 811 aaKnown RBP1.55□□□□□ -2.16
CHD3-217ENST00000574022 ZNF525Q8N782 197 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 LRRC52Q8N7C0 313 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 UBAC2Q8NBM4 344 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 ATP6V1C2Q8NEY4 427 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 OR11H7Q8NGC8 314 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 OR10AD1Q8NGE0 317 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 OR2L2Q8NH16 312 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 OR4S2Q8NH73 311 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 OR5AK3PQ8NH89 298 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 SFXN5Q8TD22 340 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 PHF10Q8WUB8 498 aaKnown RBP1.55□□□□□ -2.16
CHD3-217ENST00000574022 ING5Q8WYH8 240 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 RGP1Q92546 391 aaPredicted RBP1.55□□□□□ -2.16
CHD3-217ENST00000574022 RORBQ92753 470 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 CREB3L1Q96BA8 519 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 CCDC127Q96BQ5 260 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 HAUS1Q96CS2 278 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 ZNF689Q96CS4 500 aaPredicted RBP1.55□□□□□ -2.16
CHD3-217ENST00000574022 DNAJC19Q96DA6 116 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 GALNT14Q96FL9 552 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 ZNF599Q96NL3 588 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 VAT1Q99536 393 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 YTHDF1Q9BYJ9 559 aaKnown RBP1.55□□□□□ -2.16
CHD3-217ENST00000574022 KRTAP9-2Q9BYQ4 174 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 DEFB126Q9BYW3 111 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 SHCBP1LQ9BZQ2 653 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 SLIRPQ9GZT3 109 aaKnown RBP1.55□□□□□ -2.16
CHD3-217ENST00000574022 ING2Q9H160 280 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 ARV1Q9H2C2 271 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 SAV1Q9H4B6 383 aaPredicted RBP1.55□□□□□ -2.16
CHD3-217ENST00000574022 ZNF442Q9H7R0 627 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 WDR54Q9H977 334 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 EDA2RQ9HAV5 297 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 MYOZ1Q9NP98 299 aaPredicted RBP1.55□□□□□ -2.16
CHD3-217ENST00000574022 SLCO1B3Q9NPD5 702 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 ACOT13Q9NPJ3 140 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 MED4Q9NPJ6 270 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 RGS18Q9NS28 235 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 FAM49BQ9NUQ9 324 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 PCYOX1Q9UHG3 505 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 ZNF107Q9UII5 783 aaPredicted RBP1.55□□□□□ -2.16
CHD3-217ENST00000574022 ZNF580Q9UK33 172 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 RAB23Q9ULC3 237 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 AP3M1Q9Y2T2 418 aa1.55□□□□□ -2.16
CHD3-217ENST00000574022 WIF1Q9Y5W5 379 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms