RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 SNTG1Q9NSN8 517 aa11.89□□□□□ -0.51
CCDC40-209ENST00000573474 H3BSH0 61 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 IGLV3-1P01715 115 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 CLEC2LP0C7M8 214 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 SRMP19623 302 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 CCNOP22674 350 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 RORCP51449 518 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 MXD1Q05195 221 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 FAM27E3Q08E93 113 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 TBC1D28Q2M2D7 210 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 SNAI3Q3KNW1 292 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 COMMD2Q86X83 199 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 GALNT11Q8NCW6 608 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 TMEM106AQ96A25 262 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 SLC25A46Q96AG3 418 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 SGK3Q96BR1 496 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 MS4A3Q96HJ5 214 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 DACH2Q96NX9 599 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 SLITRK2Q9H156 845 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 TPK1Q9H3S4 243 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 RGCCQ9H4X1 137 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 ZNF391Q9UJN7 358 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 SLC25A15Q9Y619 301 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 NBEAQ8NFP9 2946 aa11.88□□□□□ -0.51
CCDC40-209ENST00000573474 A0A1B0GUH1 482 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 SHISA3A0PJX4 238 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 C5orf63A6NC05 138 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 C16orf97H3BN30 126 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 PDCD5O14737 125 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 AGFG2O95081 481 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 IGKV3-15P01624 115 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 ANOS1P23352 680 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 CHRNB4P30926 498 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 IDH3GP51553 393 aaPredicted RBP11.87□□□□□ -0.51
CCDC40-209ENST00000573474 GFOD2Q3B7J2 385 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 SLC25A35Q3KQZ1 300 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 Q6ZSR3 168 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 PLPP7Q8NBV4 271 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 APOBEC3DQ96AK3 386 aaPredicted RBP11.87□□□□□ -0.51
CCDC40-209ENST00000573474 S100PBPQ96BU1 408 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 MUCL1Q96DR8 90 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 LYZL4Q96KX0 146 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 SLIRPQ9GZT3 109 aaKnown RBP11.87□□□□□ -0.51
CCDC40-209ENST00000573474 OR10A4Q9H209 315 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 TCF7L1Q9HCS4 588 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 ZNF275Q9NSD4 429 aaPredicted RBP11.87□□□□□ -0.51
CCDC40-209ENST00000573474 COQ3Q9NZJ6 369 aa11.87□□□□□ -0.51
CCDC40-209ENST00000573474 CRNNQ9UBG3 495 aaPredicted RBP11.87□□□□□ -0.51
CCDC40-209ENST00000573474 POLEQ07864 2286 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 LOC390937A0A1W2PQ73 354 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 XRCC2O43543 280 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 MTRF1O75570 445 aaKnown RBP11.86□□□□□ -0.51
CCDC40-209ENST00000573474 CCL2P13500 99 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 RAB3BP20337 219 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 HNRNPA0Q13151 305 aaKnown RBP11.86□□□□□ -0.51
CCDC40-209ENST00000573474 C3orf36Q3SXR2 165 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 GLYATL3Q5SZD4 288 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 MTFR2Q6P444 385 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 FJX1Q86VR8 437 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 OR14K1Q8NGZ2 314 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 AKAP1Q92667 903 aaKnown RBP eCLIP11.86□□□□□ -0.51
CCDC40-209ENST00000573474 FGGYQ96C11 551 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 ORAI1Q96D31 301 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 REEP6Q96HR9 211 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 FAM71F1Q96KD3 344 aaPredicted RBP11.86□□□□□ -0.51
CCDC40-209ENST00000573474 TSC22D3Q99576 134 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 C1QTNF6Q9BXI9 259 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 BARHL1Q9BZE3 327 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 ACTR6Q9GZN1 396 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 CDH20Q9HBT6 801 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 TBCCD1Q9NVR7 557 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 EIF3KQ9UBQ5 218 aaKnown RBP11.86□□□□□ -0.51
CCDC40-209ENST00000573474 CKLFQ9UBR5 152 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 FOXJ3Q9UPW0 622 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 A3GALT2U3KPV4 340 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 PMF1-BGLAPU3KQ54 211 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 V9GYS6 101 aa11.86□□□□□ -0.51
CCDC40-209ENST00000573474 J3QW42 95 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 DHRS3O75911 302 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 CLPXO76031 633 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 IGLV1-44P01699 117 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 CELA3BP08861 270 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 ZNF20P17024 532 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 FSTP19883 344 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 CFL1P23528 166 aaKnown RBP11.85□□□□□ -0.51
CCDC40-209ENST00000573474 ASCL1P50553 236 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 ADORA2A-AS1P86434 159 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 MALLQ13021 153 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 LSAMPQ13449 338 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 PPA1Q15181 289 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 ZNF404Q494X3 552 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 SSX8Q7RTT4 187 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 CROCCP3Q8IVE0 287 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 SERPINA12Q8IW75 414 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 PAQR4Q8N4S7 273 aaPredicted RBP11.85□□□□□ -0.51
CCDC40-209ENST00000573474 PARP16Q8N5Y8 322 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 OR5L1Q8NGL2 311 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 OR5D14Q8NGL3 314 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 LILRB4Q8NHJ6 448 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 MCFD2Q8NI22 146 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms