RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 HSD17B8Q92506 261 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 AKAP1Q92667 903 aaKnown RBP eCLIP6.99□□□□□ -1.29
VPS39-213ENST00000570062 PHF21AQ96BD5 680 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 ZNF799Q96GE5 643 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 SORCS2Q96PQ0 1159 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 TRIB1Q96RU8 372 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 RNF121Q9H920 327 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 PLEKHA1Q9HB21 404 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 TMEM138Q9NPI0 162 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 PNRC2Q9NPJ4 139 aaKnown RBP6.99□□□□□ -1.29
VPS39-213ENST00000570062 SLC7A10Q9NS82 523 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 CLCF1Q9UBD9 225 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 STEAP1Q9UHE8 339 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 SLC5A6Q9Y289 635 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 A0A087WV48 116 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 TMEM8BA6NDV4 472 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 VGLL3A8MV65 326 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 PRRG2O14669 202 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 CTDSPLO15194 276 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 PIN1P1O15428 100 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 SYNGR3O43761 229 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 DOK2O60496 412 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 BPNT1O95861 308 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 PTTG1O95997 202 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 ACSM4P0C7M7 580 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 CLEC2LP0C7M8 214 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 OCMP0CE72 109 aaPredicted RBP6.98□□□□□ -1.29
VPS39-213ENST00000570062 UBBP0CG47 229 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 IGFBP3P17936 291 aaPredicted RBP6.98□□□□□ -1.29
VPS39-213ENST00000570062 BDKRB2P30411 391 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 THBS4P35443 961 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 TIMP3P35625 211 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 DDOSTP39656 456 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 MNDAP41218 407 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 HTR5AP47898 357 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 SLC6A9P48067 706 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 SOX2P48431 317 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 INPP1P49441 399 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 PRKXP51817 358 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 ART1P52961 327 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 ARF1P84077 181 aaKnown RBP6.98□□□□□ -1.29
VPS39-213ENST00000570062 MALLQ13021 153 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 P2RY6Q15077 328 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 RAB11BQ15907 218 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 TBR1Q16650 682 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 KRTAP27-1Q3LI81 207 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 UBE2NLQ5JXB2 153 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 BEND4Q6ZU67 534 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 LRRTM1Q86UE6 522 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 COMMD2Q86X83 199 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 WDFY1Q8IWB7 410 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 LRRC18Q8N456 261 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 C17orf78Q8N4C9 275 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 RBMXL3Q8N7X1 1067 aaKnown RBP6.98□□□□□ -1.29
VPS39-213ENST00000570062 C19orf18Q8NEA5 215 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 OR5L1Q8NGL2 311 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 TRMT10AQ8TBZ6 339 aaKnown RBP6.98□□□□□ -1.29
VPS39-213ENST00000570062 RGP1Q92546 391 aaPredicted RBP6.98□□□□□ -1.29
VPS39-213ENST00000570062 FBXO17Q96EF6 278 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 SOSTQ9BQB4 213 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 OR2H1Q9GZK4 316 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 ABCG5Q9H222 651 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 PPIL3Q9H2H8 161 aaKnown RBP6.98□□□□□ -1.29
VPS39-213ENST00000570062 DIABLOQ9NR28 239 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 PCDHB16Q9NRJ7 776 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 PLSCR4Q9NRQ2 329 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 AK6Q9Y3D8 172 aaKnown RBP6.98□□□□□ -1.29
VPS39-213ENST00000570062 LIPGQ9Y5X9 500 aa6.98□□□□□ -1.29
VPS39-213ENST00000570062 WDFY3Q8IZQ1 3526 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 A0A0G2JK05 382 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 A0A1B0GTH9 108 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 SHISA3A0PJX4 238 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 MBD3L4A6NDZ8 208 aaPredicted RBP6.97□□□□□ -1.29
VPS39-213ENST00000570062 MBD3L3A6NE82 208 aaPredicted RBP6.97□□□□□ -1.29
VPS39-213ENST00000570062 MBD3L5A6NJ08 208 aaPredicted RBP6.97□□□□□ -1.29
VPS39-213ENST00000570062 CENPXA8MT69 81 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 F5H5K5 113 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 P2RY10O00398 339 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 SLC17A2O00624 439 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 DHRS3O75911 302 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 IGLV3-1P01715 115 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 MMP7P09237 267 aaPredicted RBP6.97□□□□□ -1.29
VPS39-213ENST00000570062 SLC2A2P11168 524 aaPredicted RBP6.97□□□□□ -1.29
VPS39-213ENST00000570062 PSKH1P11801 424 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 B4GALT1P15291 398 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 ZNF32P17041 273 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 CRYGSP22914 178 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 HOXC12P31275 282 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 NTF4P34130 210 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 THBS2P35442 1172 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 PER3P56645 1201 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 UBE2NP61088 152 aaKnown RBP6.97□□□□□ -1.29
VPS39-213ENST00000570062 PSG4Q00888 419 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 GALK2Q01415 458 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 MFGE8Q08431 387 aaPredicted RBP6.97□□□□□ -1.29
VPS39-213ENST00000570062 RIPPLY1Q0D2K3 151 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 DBPQ10586 325 aaPredicted RBP6.97□□□□□ -1.29
VPS39-213ENST00000570062 FAPQ12884 760 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 IL18Q14116 193 aa6.97□□□□□ -1.29
VPS39-213ENST00000570062 INSL4Q14641 139 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms