RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ZNF775Q96BV0 537 aaPredicted RBP12.93□□□□□ -0.34
VPS35-210ENST00000568784 SOX7Q9BT81 388 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 TRIOO75962 3097 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 RAB27BO00194 218 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 OR2T1O43869 369 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 VSIG8P0DPA2 414 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 ABCD3P28288 659 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 CHRFAM7AQ494W8 412 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 RNF144BQ7Z419 303 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 SLC25A42Q86VD7 318 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 TMEM104Q8NE00 496 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 OR5T2Q8NGG2 359 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 SP7Q8TDD2 431 aaPredicted RBP12.93□□□□□ -0.34
VPS35-210ENST00000568784 C14orf79Q96F83 325 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 LRRC61Q9BV99 259 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 ALX4Q9H161 411 aaPredicted RBP12.93□□□□□ -0.34
VPS35-210ENST00000568784 MSGN1A6NI15 193 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 SPP1P10451 314 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 RAB32Q13637 225 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 PTCRAQ6ISU1 281 aaPredicted RBP12.93□□□□□ -0.34
VPS35-210ENST00000568784 NECAB3Q96P71 396 aaPredicted RBP12.93□□□□□ -0.34
VPS35-210ENST00000568784 EIF5A2Q9GZV4 153 aaKnown RBP12.93□□□□□ -0.34
VPS35-210ENST00000568784 CD207Q9UJ71 328 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 IGKV1D-43A0A0B4J1Z2 117 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 A0A1W2PNR3 127 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 SGCEO43556 437 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 RCC1P18754 421 aaPredicted RBP12.92□□□□□ -0.34
VPS35-210ENST00000568784 GLRA1P23415 457 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 FXYD4P59646 89 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 C11orf40Q8WZ69 217 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 PCNX3Q9H6A9 2034 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 ASH2LQ9UBL3 628 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 SPTY2D1-AS1A0A0U1RR47 76 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 TXNL1O43396 289 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 GABRR1P24046 479 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 TOMM20Q15388 145 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 AVPI1Q5T686 147 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 NANPQ8TBE9 248 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 GABRG3Q99928 467 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 SULT4A1Q9BR01 284 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 PBOV1Q9GZY1 135 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 NKX2-4Q9H2Z4 354 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 RPH3AQ9Y2J0 694 aaPredicted RBP12.92□□□□□ -0.34
VPS35-210ENST00000568784 CRYBA1P05813 215 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 RD3LP0DJH9 198 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 BCKDHBP21953 392 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 OR3A4PP47883 348 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 IKZF1Q13422 519 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 ELAVL1Q15717 326 aaKnown RBP12.92□□□□□ -0.34
VPS35-210ENST00000568784 MITD1Q8WV92 249 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 TMEM234Q8WY98 164 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 ZC3H10Q96K80 434 aaKnown RBP12.92□□□□□ -0.34
VPS35-210ENST00000568784 MESP1Q9BRJ9 268 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 RHOFQ9HBH0 211 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 OR5AC2Q9NZP5 309 aa12.92□□□□□ -0.34
VPS35-210ENST00000568784 IGLV1-36A0A0B4J1U3 117 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 FAM221BA6H8Z2 402 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 PLPP3O14495 311 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 TMEM127O75204 238 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 TXNDC12O95881 172 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 CALCRP30988 508 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 RAB13P51153 203 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 SCAND1P57086 179 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 CYCSP99999 105 aaKnown RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 DMWDQ09019 674 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 RSPO4Q2I0M5 234 aaPredicted RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 FAM69BQ5VUD6 431 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 RPL7L1Q6DKI1 246 aaKnown RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 BATF2Q8N1L9 274 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 ZNF784Q8NCA9 323 aaPredicted RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 ARHGAP5-AS1Q96IT6 56 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 SLC17A5Q9NRA2 495 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 NDRG3Q9UGV2 375 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 C14orf166Q9Y224 244 aaKnown RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 EFSO43281 561 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 ZNF735P0CB33 412 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 ZNF14P17017 642 aaPredicted RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 BLVRBP30043 206 aaPredicted RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 SNRPEP62304 92 aaKnown RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 HSF1Q00613 529 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 DLX2Q07687 328 aaPredicted RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 RIPPLY1Q0D2K3 151 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 MICBQ29980 383 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 IAH1Q2TAA2 248 aaPredicted RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 ETV3LQ6ZN32 361 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 SLC16A13Q7RTY0 426 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 GRINAQ7Z429 371 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 NKAIN3Q8N8D7 197 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 PIK3IP1Q96FE7 263 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 C1orf198Q9H425 327 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 GPR84Q9NQS5 396 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 DOCK8Q8NF50 2099 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 MT-ATP6P00846 226 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 DAOP14920 347 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 CAPZBP47756 277 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 MECP2P51608 486 aaKnown RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 TERB2Q8NHR7 220 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 OR5B2Q96R09 309 aa12.91□□□□□ -0.34
VPS35-210ENST00000568784 YBX2Q9Y2T7 364 aaKnown RBP12.91□□□□□ -0.34
VPS35-210ENST00000568784 VSTM2BA6NLU5 285 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms