RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 VRK3Q8IV63 474 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 WDFY1Q8IWB7 410 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 PUSL1Q8N0Z8 303 aaKnown RBP2.47□□□□□ -2.01
VPS35-209ENST00000568642 Q8N402 240 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 DNAJC22Q8N4W6 341 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 MREGQ8N565 214 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 TMEM251Q8N6I4 163 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 PRELID2Q8N945 189 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 OR1L3Q8NH93 324 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 OR2AE1Q8NHA4 323 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 OR10J5Q8NHC4 309 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 PIFOQ8TCI5 191 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 ACER1Q8TDN7 264 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 PHF10Q8WUB8 498 aaKnown RBP2.47□□□□□ -2.01
VPS35-209ENST00000568642 TMEM174Q8WUU8 243 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 APOBEC4Q8WW27 367 aaKnown RBP2.47□□□□□ -2.01
VPS35-209ENST00000568642 CRYGNQ8WXF5 182 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 DNAJA3Q96EY1 480 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 MS4A4EQ96PG1 132 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 HBEGFQ99075 208 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 LPAR4Q99677 370 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 SMR3AQ99954 134 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 SH3GL3Q99963 347 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 CCDC28BQ9BUN5 200 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 MLST8Q9BVC4 326 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 TMEM109Q9BVC6 243 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 NAT10Q9H0A0 1025 aaKnown RBP2.47□□□□□ -2.01
VPS35-209ENST00000568642 PIGUQ9H490 435 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 POLD4Q9HCU8 107 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 CLN6Q9NWW5 311 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 RHBDL2Q9NX52 303 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 B3GNT2Q9NY97 397 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 IL17CQ9P0M4 197 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 OPN4Q9UHM6 478 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 MAN1B1Q9UKM7 699 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 ELF5Q9UKW6 265 aaPredicted RBP2.47□□□□□ -2.01
VPS35-209ENST00000568642 SNX24Q9Y343 169 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 OARD1Q9Y530 152 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 CPQQ9Y646 472 aa2.47□□□□□ -2.01
VPS35-209ENST00000568642 MYO18AQ92614 2054 aaKnown RBP2.46□□□□□ -2.01
VPS35-209ENST00000568642 GLYATL1P3A0A0U1RQE8 302 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 hCG_38984A0A1B0GV85 526 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 A0A1B0GW55 424 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 GAGE12JA6NER3 117 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 NKX6-3A6NJ46 265 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 C15orf62A8K5M9 175 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 E5RI56 91 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 G3V3Y1 287 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 GOSR2O14653 212 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 EPHB6O15197 1021 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 MPZL2O60487 215 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 JTBO76095 146 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 TDP2O95551 362 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 CD8AP01732 235 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 CATP04040 527 aaKnown RBP2.46□□□□□ -2.02
VPS35-209ENST00000568642 HMGN1P05114 100 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 CDK1P06493 297 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 MELTFP08582 738 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 WNT2P09544 360 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 DUX4L2P0CJ85 424 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 DUX4L3P0CJ86 424 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 DUX4L4P0CJ87 422 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 DUX4L5P0CJ88 424 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 DUX4L6P0CJ89 424 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 DUX4L7P0CJ90 424 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 C8orf88P0DMB2 117 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 IGHV4-30-4P0DP06 118 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 CSNK2A2P19784 350 aaPredicted RBP2.46□□□□□ -2.02
VPS35-209ENST00000568642 ME2P23368 584 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 C21orf33P30042 268 aaPredicted RBP2.46□□□□□ -2.02
VPS35-209ENST00000568642 RFC3P40938 356 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 YAP1P46937 504 aaKnown RBP2.46□□□□□ -2.02
VPS35-209ENST00000568642 OR3A2P47893 321 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 ZFP36L2P47974 494 aaKnown RBP2.46□□□□□ -2.02
VPS35-209ENST00000568642 EMDP50402 254 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 ERFP50548 548 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 DAP3P51398 398 aaKnown RBP2.46□□□□□ -2.02
VPS35-209ENST00000568642 DNA2P51530 1060 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 UBE2E1P51965 193 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 GTF2A1P52655 376 aaPredicted RBP2.46□□□□□ -2.02
VPS35-209ENST00000568642 FOXG1P55316 489 aaPredicted RBP2.46□□□□□ -2.02
VPS35-209ENST00000568642 DLX5P56178 289 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 FBXW4P57775 412 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 ERVPABLB-1P60509 514 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 OSTNP61366 133 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 DEFA6Q01524 100 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 ORC2Q13416 577 aaPredicted RBP2.46□□□□□ -2.02
VPS35-209ENST00000568642 TMEM35AQ53FP2 167 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 UNC50Q53HI1 259 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 GCSAMLQ5JQS6 135 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 RBM48Q5RL73 367 aaKnown RBP2.46□□□□□ -2.02
VPS35-209ENST00000568642 HES3Q5TGS1 186 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 C1orf189Q5VU69 101 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 MYO7BQ6PIF6 2116 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 DUX4L9Q6RFH8 374 aaPredicted RBP2.46□□□□□ -2.02
VPS35-209ENST00000568642 EPGNQ6UW88 154 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 Q6ZSR9 355 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 ZNF554Q86TJ5 538 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 RIMKLAQ8IXN7 391 aa2.46□□□□□ -2.02
VPS35-209ENST00000568642 BLIDQ8IZY5 108 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms