RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 A0A0U1RQV5 110 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 GGT3PA6NGU5 568 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 E7EQL1 145 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 PLAUP00749 431 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 NGFP01138 241 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 ZNF250P15622 560 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 C21orf33P30042 268 aaPredicted RBP7.95□□□□□ -1.14
LDLR-210ENST00000559340 TTKP33981 857 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 WNT5AP41221 380 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 CCR9P51686 369 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 WNT4P56705 351 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 KLF3P57682 345 aaPredicted RBP7.95□□□□□ -1.14
LDLR-210ENST00000559340 MVKQ03426 396 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 ALKBH1Q13686 389 aaKnown RBP7.95□□□□□ -1.14
LDLR-210ENST00000559340 ZMAT1Q5H9K5 638 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 TMEM244Q5VVB8 128 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 MBNL2Q5VZF2 373 aaKnown RBP7.95□□□□□ -1.14
LDLR-210ENST00000559340 RPL22L1Q6P5R6 122 aaKnown RBP7.95□□□□□ -1.14
LDLR-210ENST00000559340 FBXW12Q6X9E4 464 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 PGAP1Q75T13 922 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 ZNF295-AS1Q8N0V1 137 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 MUC15Q8N387 334 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 FTMTQ8N4E7 242 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 NANOGP1Q8N7R0 232 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 SLC25A40Q8TBP6 338 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 TMEM171Q8WVE6 324 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 SPRYD4Q8WW59 207 aaPredicted RBP7.95□□□□□ -1.14
LDLR-210ENST00000559340 MRPL24Q96A35 216 aaKnown RBP7.95□□□□□ -1.14
LDLR-210ENST00000559340 HAVCR1Q96D42 359 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 MARS2Q96GW9 593 aaKnown RBP7.95□□□□□ -1.14
LDLR-210ENST00000559340 HS3ST6Q96QI5 342 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 TTTY10Q9BZA0 68 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 PBOV1Q9GZY1 135 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 COMMD4Q9H0A8 199 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 PLK3Q9H4B4 646 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 UBTD1Q9HAC8 227 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 VCX3AQ9NNX9 186 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 CYSLTR2Q9NS75 346 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 BABAM2Q9NXR7 383 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 PTTG3PQ9NZH4 202 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 ERVK-18Q9QC07 812 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 NUFIP1Q9UHK0 495 aaKnown RBP7.95□□□□□ -1.14
LDLR-210ENST00000559340 STARD10Q9Y365 291 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 PMF1-BGLAPU3KQ54 211 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 SPG11Q96JI7 2443 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 ADGRG4Q8IZF6 3080 aa7.95□□□□□ -1.14
LDLR-210ENST00000559340 A0A087WXM4 84 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 A0A1B0GVI7 797 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 PLSCR5A0PG75 271 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 MAGEB4O15481 346 aaPredicted RBP7.94□□□□□ -1.14
LDLR-210ENST00000559340 IGHV3-13P01766 116 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 ERCC1P07992 297 aaPredicted RBP7.94□□□□□ -1.14
LDLR-210ENST00000559340 OR4A8P0C604 315 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 UBCP0CG48 685 aaKnown RBP7.94□□□□□ -1.14
LDLR-210ENST00000559340 SLC2A1P11166 492 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 MAP2K3P46734 347 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 SNRPD2P62316 118 aaKnown RBP7.94□□□□□ -1.14
LDLR-210ENST00000559340 BDH1Q02338 343 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 SPOCK1Q08629 439 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 SPHARQ15513 63 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 EFNB3Q15768 340 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 RFPL4BQ6ZWI9 263 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 PRSS45Q7RTY3 260 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 NAA40Q86UY6 237 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 COMMD2Q86X83 199 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 CATSPERDQ86XM0 798 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 ELMOD2Q8IZ81 293 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 ZNF101Q8IZC7 436 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 RFLNBQ8N5W9 214 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 CSNK2A3Q8NEV1 391 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 OR2G2Q8NGZ5 317 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 KLF14Q8TD94 323 aaPredicted RBP7.94□□□□□ -1.14
LDLR-210ENST00000559340 GATAD2BQ8WXI9 593 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 FCGR1BQ92637 280 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 RORBQ92753 470 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 PIGTQ969N2 578 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 SPSB4Q96A44 273 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 SGK3Q96BR1 496 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 CMBLQ96DG6 245 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 PELI1Q96FA3 418 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 REEP6Q96HR9 211 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 ZNF649Q9BS31 505 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 REPIN1Q9BWE0 567 aaKnown RBP7.94□□□□□ -1.14
LDLR-210ENST00000559340 OR2J1Q9GZK6 312 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 SLC22A4Q9H015 551 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 MS4A5Q9H3V2 200 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 ISYNA1Q9NPH2 558 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 CBLN4Q9NTU7 201 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 ACOXLQ9NUZ1 547 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 FAM206AQ9NX38 181 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 CLEC2DQ9UHP7 191 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 DUSP13Q9UII6 198 aa7.94□□□□□ -1.14
LDLR-210ENST00000559340 USF3Q68DE3 2245 aa7.93□□□□□ -1.14
LDLR-210ENST00000559340 TRBV2A0A0J9YWF9 115 aa7.93□□□□□ -1.14
LDLR-210ENST00000559340 A0A1W2PPW3 197 aa7.93□□□□□ -1.14
LDLR-210ENST00000559340 LOC390937A0A1W2PQ73 354 aa7.93□□□□□ -1.14
LDLR-210ENST00000559340 TMEM212A6NML5 194 aa7.93□□□□□ -1.14
LDLR-210ENST00000559340 PRR32B1ATL7 298 aa7.93□□□□□ -1.14
LDLR-210ENST00000559340 OGG1O15527 345 aa7.93□□□□□ -1.14
LDLR-210ENST00000559340 TIMM8AO60220 97 aaPredicted RBP7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms