RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 DCUN1D5Q9BTE7 237 aa2.3□□□□□ -2.04
TRAV28-201ENST00000557548 MAP1LC3CQ9BXW4 147 aa2.3□□□□□ -2.04
TRAV28-201ENST00000557548 ANKHQ9HCJ1 492 aa2.3□□□□□ -2.04
TRAV28-201ENST00000557548 MCUBQ9NWR8 336 aa2.3□□□□□ -2.04
TRAV28-201ENST00000557548 STMN3Q9NZ72 180 aa2.3□□□□□ -2.04
TRAV28-201ENST00000557548 ZNF282Q9UDV7 671 aaPredicted RBP2.3□□□□□ -2.04
TRAV28-201ENST00000557548 SHPKQ9UHJ6 478 aa2.3□□□□□ -2.04
TRAV28-201ENST00000557548 C3orf18Q9UK00 162 aa2.3□□□□□ -2.04
TRAV28-201ENST00000557548 CLEC4EQ9ULY5 219 aa2.3□□□□□ -2.04
TRAV28-201ENST00000557548 CSAG2Q9Y5P2 127 aa2.3□□□□□ -2.04
TRAV28-201ENST00000557548 V9GYQ6 96 aa2.3□□□□□ -2.04
TRAV28-201ENST00000557548 MROH7Q68CQ1 1323 aa2.3□□□□□ -2.04
TRAV28-201ENST00000557548 ADGRA3Q8IWK6 1321 aa2.3□□□□□ -2.04
TRAV28-201ENST00000557548 JCADQ9P266 1359 aa2.3□□□□□ -2.04
TRAV28-201ENST00000557548 NUP160Q12769 1436 aa2.3□□□□□ -2.04
TRAV28-201ENST00000557548 KDM6BO15054 1643 aa2.3□□□□□ -2.04
TRAV28-201ENST00000557548 MAPKBP1O60336 1514 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 GRIN2BQ13224 1484 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 SOGA1O94964 1423 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 RAD50Q92878 1312 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 USP42Q9H9J4 1324 aaKnown RBP2.29□□□□□ -2.04
TRAV28-201ENST00000557548 A0A1W2PRF3 423 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 A0A1W2PRM7 423 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 ZFP92A6NM28 416 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 NCBP2LA6PVI3 153 aaKnown RBP2.29□□□□□ -2.04
TRAV28-201ENST00000557548 H3BN98 237 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 KLRC4-KLRK1H3BQV0 150 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 AQP9O43315 295 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 SNAI2O43623 268 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 PSIP1O75475 530 aaKnown RBP2.29□□□□□ -2.04
TRAV28-201ENST00000557548 SRP72O76094 671 aaKnown RBP2.29□□□□□ -2.04
TRAV28-201ENST00000557548 AQP8O94778 261 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 LDOC1O95751 146 aaPredicted RBP2.29□□□□□ -2.04
TRAV28-201ENST00000557548 GIPP09681 153 aaPredicted RBP2.29□□□□□ -2.04
TRAV28-201ENST00000557548 CTXN2P0C2S0 81 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 P0C879 139 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 OCM2P0CE71 109 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 SLC35E2BP0CK96 405 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 PGAM1P18669 254 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 GGT1P19440 569 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 RAB4AP20338 218 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 SYT1P21579 422 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 CFL1P23528 166 aaKnown RBP2.29□□□□□ -2.04
TRAV28-201ENST00000557548 AK4P27144 223 aaPredicted RBP2.29□□□□□ -2.04
TRAV28-201ENST00000557548 HTR2CP28335 458 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 KDELR2P33947 212 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 HRH1P35367 487 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 CSKP41240 450 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 TUFMP49411 452 aaKnown RBP2.29□□□□□ -2.04
TRAV28-201ENST00000557548 SERPINB8P50452 374 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 RND2P52198 227 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 AP3S2P59780 193 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 RPS21P63220 83 aaKnown RBP2.29□□□□□ -2.04
TRAV28-201ENST00000557548 S100A12P80511 92 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 CYP24A1Q07973 514 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 TMED2Q15363 201 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 SGCAQ16586 387 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 LPAL2Q16609 132 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 MOGQ16653 247 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 ZBED5Q49AG3 693 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 LRRC10Q5BKY1 277 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 UTF1Q5T230 341 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 TPTE2P1Q5T6R2 138 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 ZNF621Q6ZSS3 439 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 LINC00336Q6ZUF6 198 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 TMEM179Q6ZVK1 233 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 PEX26Q7Z412 305 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 SLC13A5Q86YT5 568 aaPredicted RBP2.29□□□□□ -2.04
TRAV28-201ENST00000557548 FUNDC1Q8IVP5 155 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 VKORC1L1Q8N0U8 176 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 CEND1Q8N111 149 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 KIF2BQ8N4N8 673 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 C19orf18Q8NEA5 215 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 ZNF680Q8NEM1 530 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 OR4F15Q8NGB8 312 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 OR6N2Q8NGY6 317 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 LGALS14Q8TCE9 139 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 ACER1Q8TDN7 264 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 GEMIN6Q8WXD5 167 aaKnown RBP2.29□□□□□ -2.04
TRAV28-201ENST00000557548 TFGQ92734 400 aaPredicted RBP2.29□□□□□ -2.04
TRAV28-201ENST00000557548 UCN3Q969E3 161 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 RAD51AP1Q96B01 352 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 FAM3DQ96BQ1 224 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 TMA16Q96EY4 203 aaKnown RBP2.29□□□□□ -2.04
TRAV28-201ENST00000557548 CPB2Q96IY4 423 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 CEP19Q96LK0 163 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 ZFP3Q96NJ6 502 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 TIMM29Q9BSF4 260 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 GABARAPL3Q9BY60 117 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 TOLLIPQ9H0E2 274 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 SYT4Q9H2B2 425 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 WDR55Q9H6Y2 383 aaPredicted RBP2.29□□□□□ -2.04
TRAV28-201ENST00000557548 KIR3DX1Q9H7L2 352 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 UBE2ZQ9H832 354 aaPredicted RBP2.29□□□□□ -2.04
TRAV28-201ENST00000557548 WDR54Q9H977 334 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 PATZ1Q9HBE1 687 aaKnown RBP2.29□□□□□ -2.04
TRAV28-201ENST00000557548 SLCO1B3Q9NPD5 702 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 TMEM9BQ9NQ34 198 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 NECAP2Q9NVZ3 263 aa2.29□□□□□ -2.04
TRAV28-201ENST00000557548 VNN3Q9NY84 501 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms