RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 FLOT2Q14254 428 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 ZNHIT3Q15649 155 aaPredicted RBP3.41□□□□□ -1.86
SCFD1-211ENST00000554437 BSXQ3C1V8 233 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 DNAL1Q4LDG9 190 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 CLVS2Q5SYC1 327 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 TPTE2P1Q5T6R2 138 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 WDR82Q6UXN9 313 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 TMEM135Q86UB9 458 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 HSD17B11Q8NBQ5 300 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 CDS1Q92903 461 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 ELSPBP1Q96BH3 223 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 DYNLL2Q96FJ2 89 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 MED8Q96G25 268 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 SCGB3A2Q96PL1 93 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 KLHDC3Q9BQ90 382 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 AGMATQ9BSE5 352 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 PORCNQ9H237 461 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 RNF167Q9H6Y7 350 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 ISYNA1Q9NPH2 558 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 PLEKHJ1Q9NW61 149 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 MARCH5Q9NX47 278 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 SLC39A1Q9NY26 324 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 SLC25A37Q9NYZ2 338 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 CD274Q9NZQ7 290 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 BTNL2Q9UIR0 455 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 ABCB11O95342 1321 aa3.41□□□□□ -1.86
SCFD1-211ENST00000554437 COL22A1Q8NFW1 1626 aaPredicted RBP3.41□□□□□ -1.86
SCFD1-211ENST00000554437 IGKV1D-8A0A087WSZ0 117 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 IGHV1OR21-1A0A087WYE8 117 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 IGKV6D-21A0A0A0MT36 114 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 DFFAO00273 331 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 NME4O00746 187 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 ERI3O43414 337 aaKnown RBP3.4□□□□□ -1.87
SCFD1-211ENST00000554437 RAD51CO43502 376 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 AQP8O94778 261 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 GIMD1P0DJR0 217 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 IGFBP3P17936 291 aaPredicted RBP3.4□□□□□ -1.87
SCFD1-211ENST00000554437 MAS1LP35410 378 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 BTDP43251 543 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 KIR2DS2P43631 304 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 HCAR3P49019 387 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 GDI2P50395 445 aaKnown RBP3.4□□□□□ -1.87
SCFD1-211ENST00000554437 RAB7AP51149 207 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 CAV2P51636 162 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 ZNF133P52736 654 aaPredicted RBP3.4□□□□□ -1.87
SCFD1-211ENST00000554437 TAS2R39P59534 338 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 REEP5Q00765 189 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 EGFEM1PQ0D2K5 195 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 ST3GAL4Q11206 333 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 TWF1Q12792 350 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 DYNC1I2Q13409 638 aaKnown RBP3.4□□□□□ -1.87
SCFD1-211ENST00000554437 PSG5Q15238 335 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 IL17AQ16552 155 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 SLC36A2Q495M3 483 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 PIGGQ5H8A4 983 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 SDHAF4Q5VUM1 108 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 FRMPD2BQ6IN97 320 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 ZNF530Q6P9A1 599 aaPredicted RBP3.4□□□□□ -1.87
SCFD1-211ENST00000554437 ZNF571Q7Z3V5 609 aaPredicted RBP3.4□□□□□ -1.87
SCFD1-211ENST00000554437 HORMAD1Q86X24 394 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 RALGPS2Q86X27 583 aaPredicted RBP3.4□□□□□ -1.87
SCFD1-211ENST00000554437 BBS7Q8IWZ6 715 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 PGAM4Q8N0Y7 254 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 ZNF786Q8N393 782 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 LRRC52Q8N7C0 313 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 TTLQ8NG68 377 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 RNASEH2CQ8TDP1 164 aaKnown RBP3.4□□□□□ -1.87
SCFD1-211ENST00000554437 RNF133Q8WVZ7 376 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 CMTM5Q96DZ9 223 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 PGLYRP4Q96LB8 373 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 TSNAXQ99598 290 aaKnown RBP3.4□□□□□ -1.87
SCFD1-211ENST00000554437 GPR21Q99679 349 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 OR51J1Q9H342 316 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 IFT46Q9NQC8 304 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 EXD2Q9NVH0 621 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 NLE1Q9NVX2 485 aaPredicted RBP3.4□□□□□ -1.87
SCFD1-211ENST00000554437 C3orf18Q9UK00 162 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 TBL2Q9Y4P3 447 aaKnown RBP3.4□□□□□ -1.87
SCFD1-211ENST00000554437 POLR3HQ9Y535 204 aaPredicted RBP3.4□□□□□ -1.87
SCFD1-211ENST00000554437 AK9Q5TCS8 1911 aa3.4□□□□□ -1.87
SCFD1-211ENST00000554437 MAP3K5Q99683 1374 aa3.39□□□□□ -1.87
SCFD1-211ENST00000554437 A0A1B0GVI7 797 aa3.39□□□□□ -1.87
SCFD1-211ENST00000554437 ANKRD63C9JTQ0 380 aa3.39□□□□□ -1.87
SCFD1-211ENST00000554437 LRRN3E7EW58 273 aa3.39□□□□□ -1.87
SCFD1-211ENST00000554437 F6UB75 175 aa3.39□□□□□ -1.87
SCFD1-211ENST00000554437 K7EMT4 169 aa3.39□□□□□ -1.87
SCFD1-211ENST00000554437 ZNF189O75820 626 aaPredicted RBP3.39□□□□□ -1.87
SCFD1-211ENST00000554437 OR8U9P0C7N5 309 aa3.39□□□□□ -1.87
SCFD1-211ENST00000554437 ZNF7P17097 686 aaPredicted RBP3.39□□□□□ -1.87
SCFD1-211ENST00000554437 RAB5AP20339 215 aa3.39□□□□□ -1.87
SCFD1-211ENST00000554437 COILP38432 576 aaPredicted RBP3.39□□□□□ -1.87
SCFD1-211ENST00000554437 RORCP51449 518 aa3.39□□□□□ -1.87
SCFD1-211ENST00000554437 HCCSP53701 268 aa3.39□□□□□ -1.87
SCFD1-211ENST00000554437 AP3S2P59780 193 aa3.39□□□□□ -1.87
SCFD1-211ENST00000554437 ACTBP60709 375 aa3.39□□□□□ -1.87
SCFD1-211ENST00000554437 ACTG1P63261 375 aa3.39□□□□□ -1.87
SCFD1-211ENST00000554437 MRPS25P82663 173 aaKnown RBP3.39□□□□□ -1.87
SCFD1-211ENST00000554437 ZNF92Q03936 586 aa3.39□□□□□ -1.87
SCFD1-211ENST00000554437 STX4Q12846 297 aa3.39□□□□□ -1.87
SCFD1-211ENST00000554437 PDIA2Q13087 525 aaKnown RBP3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms