RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 GABRA1P14867 456 aa23.12■■□□□ 1.29
CCDC88C-205ENST00000553403 EIF2B2P49770 351 aaKnown RBP23.12■■□□□ 1.29
CCDC88C-205ENST00000553403 SRSF6Q13247 344 aaKnown RBP23.12■■□□□ 1.29
CCDC88C-205ENST00000553403 RSPO1Q2MKA7 263 aaPredicted RBP23.12■■□□□ 1.29
CCDC88C-205ENST00000553403 CEACAM16Q2WEN9 425 aa23.12■■□□□ 1.29
CCDC88C-205ENST00000553403 NRN1LQ496H8 165 aa23.12■■□□□ 1.29
CCDC88C-205ENST00000553403 ADGRE4PQ86SQ3 457 aa23.12■■□□□ 1.29
CCDC88C-205ENST00000553403 CDH26Q8IXH8 852 aa23.12■■□□□ 1.29
CCDC88C-205ENST00000553403 SLC22A24Q8N4F4 322 aa23.12■■□□□ 1.29
CCDC88C-205ENST00000553403 COPZ2Q9P299 210 aa23.12■■□□□ 1.29
CCDC88C-205ENST00000553403 A0A0B4J293 547 aa23.11■■□□□ 1.29
CCDC88C-205ENST00000553403 OR6C65A6NJZ3 312 aa23.11■■□□□ 1.29
CCDC88C-205ENST00000553403 ZNF724A8MTY0 619 aa23.11■■□□□ 1.29
CCDC88C-205ENST00000553403 F5H5K5 113 aa23.11■■□□□ 1.29
CCDC88C-205ENST00000553403 INMT-MINDY4F8WBC2 141 aa23.11■■□□□ 1.29
CCDC88C-205ENST00000553403 MRPL33O75394 65 aaKnown RBP23.11■■□□□ 1.29
CCDC88C-205ENST00000553403 ITGB2P05107 769 aa23.11■■□□□ 1.29
CCDC88C-205ENST00000553403 TNFSF10P50591 281 aa23.11■■□□□ 1.29
CCDC88C-205ENST00000553403 Q6ZSR3 168 aa23.11■■□□□ 1.29
CCDC88C-205ENST00000553403 OR14K1Q8NGZ2 314 aa23.11■■□□□ 1.29
CCDC88C-205ENST00000553403 PHF21AQ96BD5 680 aa23.11■■□□□ 1.29
CCDC88C-205ENST00000553403 SLCO5A1Q9H2Y9 848 aa23.11■■□□□ 1.29
CCDC88C-205ENST00000553403 METTL17Q9H7H0 456 aaPredicted RBP23.11■■□□□ 1.29
CCDC88C-205ENST00000553403 CIB4A0PJX0 185 aa23.1■■□□□ 1.29
CCDC88C-205ENST00000553403 M0R135 149 aa23.1■■□□□ 1.29
CCDC88C-205ENST00000553403 SGCEO43556 437 aa23.1■■□□□ 1.29
CCDC88C-205ENST00000553403 CCNKO75909 580 aa23.1■■□□□ 1.29
CCDC88C-205ENST00000553403 PCBD1P61457 104 aa23.1■■□□□ 1.29
CCDC88C-205ENST00000553403 TATDN3Q17R31 274 aa23.1■■□□□ 1.29
CCDC88C-205ENST00000553403 ZNF799Q96GE5 643 aa23.1■■□□□ 1.29
CCDC88C-205ENST00000553403 FAM71F1Q96KD3 344 aaPredicted RBP23.1■■□□□ 1.29
CCDC88C-205ENST00000553403 BCO1Q9HAY6 547 aa23.1■■□□□ 1.29
CCDC88C-205ENST00000553403 NUBP2Q9Y5Y2 271 aa23.1■■□□□ 1.29
CCDC88C-205ENST00000553403 A0A0A6YYH2 397 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 A6NJ64 397 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 SYNGR3O43761 229 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 RAB6AP20340 208 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 CRYGSP22914 178 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 CCL11P51671 97 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 SNTB2Q13425 540 aaKnown RBP23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 MTFR2Q6P444 385 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 IGFL2Q6UWQ7 119 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 OR52N4Q8NGI2 321 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 KCNK15Q9H427 330 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 NCOA6Q14686 2063 aaPredicted RBP23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 NAP1L6A6NFF2 107 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 WT1P19544 449 aaPredicted RBP23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 ANOS1P23352 680 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 SLC6A9P48067 706 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 RTP5Q14D33 572 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 RNPS1Q15287 305 aaKnown RBP23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 TSPO2Q5TGU0 170 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 DRAM2Q6UX65 266 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 BIVMQ86UB2 503 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 OR4D6Q8NGJ1 314 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 OR13C9Q8NGT0 318 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 GCDHQ92947 438 aaPredicted RBP23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 SOX7Q9BT81 388 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 PRRG4Q9BZD6 226 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 ATG5Q9H1Y0 275 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 CNTD2Q9H8S5 307 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 ZDHHC11Q9H8X9 412 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 TIMM10BQ9Y5J6 103 aa23.09■■□□□ 1.29
CCDC88C-205ENST00000553403 ANKRD20A5PA0PJZ0 165 aa23.08■■□□□ 1.29
CCDC88C-205ENST00000553403 B4GALT1P15291 398 aa23.08■■□□□ 1.29
CCDC88C-205ENST00000553403 ABOP16442 354 aa23.08■■□□□ 1.29
CCDC88C-205ENST00000553403 KRTAP27-1Q3LI81 207 aa23.08■■□□□ 1.29
CCDC88C-205ENST00000553403 NAA40Q86UY6 237 aa23.08■■□□□ 1.29
CCDC88C-205ENST00000553403 OR1F12Q8NHA8 337 aa23.08■■□□□ 1.29
CCDC88C-205ENST00000553403 LYZL4Q96KX0 146 aa23.08■■□□□ 1.29
CCDC88C-205ENST00000553403 NKX3-1Q99801 234 aaPredicted RBP23.08■■□□□ 1.29
CCDC88C-205ENST00000553403 LIPGQ9Y5X9 500 aa23.08■■□□□ 1.29
CCDC88C-205ENST00000553403 ALG5Q9Y673 324 aa23.08■■□□□ 1.29
CCDC88C-205ENST00000553403 V9GYS6 101 aa23.08■■□□□ 1.29
CCDC88C-205ENST00000553403 TRGV5A0A0B4J1U4 118 aa23.07■■□□□ 1.28
CCDC88C-205ENST00000553403 E9PLN8 166 aa23.07■■□□□ 1.28
CCDC88C-205ENST00000553403 RPL36A-HNRNPH2H7BZ11 118 aa23.07■■□□□ 1.28
CCDC88C-205ENST00000553403 BPNT1O95861 308 aa23.07■■□□□ 1.28
CCDC88C-205ENST00000553403 ALDOBP05062 364 aa23.07■■□□□ 1.28
CCDC88C-205ENST00000553403 CPN1P15169 458 aa23.07■■□□□ 1.28
CCDC88C-205ENST00000553403 CHMP1BQ7LBR1 199 aa23.07■■□□□ 1.28
CCDC88C-205ENST00000553403 OR5AS1Q8N127 324 aa23.07■■□□□ 1.28
CCDC88C-205ENST00000553403 FDCSPQ8NFU4 85 aa23.07■■□□□ 1.28
CCDC88C-205ENST00000553403 OR52H1Q8NGJ2 320 aa23.07■■□□□ 1.28
CCDC88C-205ENST00000553403 OR6F1Q8NGZ6 308 aa23.07■■□□□ 1.28
CCDC88C-205ENST00000553403 FNDC9Q8TBE3 224 aa23.07■■□□□ 1.28
CCDC88C-205ENST00000553403 DEDD2Q8WXF8 326 aa23.07■■□□□ 1.28
CCDC88C-205ENST00000553403 CACNG6Q9BXT2 260 aa23.07■■□□□ 1.28
CCDC88C-205ENST00000553403 OR10A2Q9H208 303 aa23.07■■□□□ 1.28
CCDC88C-205ENST00000553403 LDAHQ9H6V9 325 aa23.07■■□□□ 1.28
CCDC88C-205ENST00000553403 RAB22AQ9UL26 194 aa23.07■■□□□ 1.28
CCDC88C-205ENST00000553403 TRAV18A0A075B6X5 111 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 OR6C6A6NF89 314 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 ZNF891A8MT65 544 aaPredicted RBP23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 TCRBP04435 133 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 ZNF32P17041 273 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 THBS4P35443 961 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 SLC16A14Q7RTX9 510 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 TUSC5Q8IXB3 177 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 UBASH3BQ8TF42 649 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms