RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 EBPLQ9BY08 206 aa1.77□□□□□ -2.13
PTCH1-223ENST00000551623 OR2J1Q9GZK6 312 aa1.77□□□□□ -2.13
PTCH1-223ENST00000551623 SEMA6AQ9H2E6 1030 aa1.77□□□□□ -2.13
PTCH1-223ENST00000551623 LRMDAQ9H2I8 198 aa1.77□□□□□ -2.13
PTCH1-223ENST00000551623 METTL8Q9H825 291 aaKnown RBP1.77□□□□□ -2.13
PTCH1-223ENST00000551623 NOL11Q9H8H0 719 aaKnown RBP1.77□□□□□ -2.13
PTCH1-223ENST00000551623 CAB39LQ9H9S4 337 aa1.77□□□□□ -2.13
PTCH1-223ENST00000551623 CDH20Q9HBT6 801 aa1.77□□□□□ -2.13
PTCH1-223ENST00000551623 ZFP57Q9NU63 452 aa1.77□□□□□ -2.13
PTCH1-223ENST00000551623 TMEM38BQ9NVV0 291 aa1.77□□□□□ -2.13
PTCH1-223ENST00000551623 PITPNC1Q9UKF7 332 aa1.77□□□□□ -2.13
PTCH1-223ENST00000551623 TMCO1Q9UM00 188 aa1.77□□□□□ -2.13
PTCH1-223ENST00000551623 TFR2Q9UP52 801 aa1.77□□□□□ -2.13
PTCH1-223ENST00000551623 GAB2Q9UQC2 676 aa1.77□□□□□ -2.13
PTCH1-223ENST00000551623 TCF19Q9Y242 345 aa1.77□□□□□ -2.13
PTCH1-223ENST00000551623 CCL27Q9Y4X3 112 aa1.77□□□□□ -2.13
PTCH1-223ENST00000551623 LYVE1Q9Y5Y7 322 aa1.77□□□□□ -2.13
PTCH1-223ENST00000551623 KCNE3Q9Y6H6 103 aa1.77□□□□□ -2.13
PTCH1-223ENST00000551623 ABCA13Q86UQ4 5058 aa1.77□□□□□ -2.13
PTCH1-223ENST00000551623 LOC100509620A0A075B734 347 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 IGHV4-28A0A0C4DH34 117 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 IQCMA0A1B0GVH7 501 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 A0A1B0GW55 424 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 TCRBV4S1A1TA0A5B7 111 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 MEIOCA2RUB1 952 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 A6NDX4 124 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 NUPR2A6NF83 97 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 FAM159BA6NKW6 160 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 DUXAA6NLW8 204 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 FAM90A22PA8MWA6 464 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 CENPBD1B2RD01 187 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 PRAC2D3DTV9 90 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 HSPB6O14558 160 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 AP3D1O14617 1153 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 OR2T1O43869 369 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 OR10H3O60404 316 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 FCMRO60667 390 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 BANF1O75531 89 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 KLHL2O95198 593 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 TNFRSF6BO95407 300 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 LY6G6CO95867 125 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 KRT14P02533 472 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 FGGP02679 453 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 DUX4L2P0CJ85 424 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 DUX4L3P0CJ86 424 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 DUX4L5P0CJ88 424 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 DUX4L6P0CJ89 424 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 DUX4L7P0CJ90 424 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 COX5BP10606 129 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 CCL2P13500 99 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 GFAPP14136 432 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 CHN1P15882 459 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 AZGP1P25311 298 aaKnown RBP1.76□□□□□ -2.13
PTCH1-223ENST00000551623 STOMP27105 288 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 PMELP40967 661 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 ELK3P41970 407 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 ACAA2P42765 397 aaKnown RBP1.76□□□□□ -2.13
PTCH1-223ENST00000551623 KIR3DL2P43630 455 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 CAPZA2P47755 286 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 IDH2P48735 452 aaKnown RBP1.76□□□□□ -2.13
PTCH1-223ENST00000551623 CENPAP49450 140 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 SRP9P49458 86 aaKnown RBP1.76□□□□□ -2.13
PTCH1-223ENST00000551623 LUMP51884 338 aaPredicted RBP1.76□□□□□ -2.13
PTCH1-223ENST00000551623 PPP1CBP62140 327 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 ARF6P62330 175 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 RPL23AP62750 156 aaKnown RBP1.76□□□□□ -2.13
PTCH1-223ENST00000551623 KCNJ10P78508 379 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 MRPS34P82930 218 aaKnown RBP1.76□□□□□ -2.13
PTCH1-223ENST00000551623 IL5RAQ01344 420 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 GLO1Q04760 184 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 C2orf80Q0P641 193 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 FUT5Q11128 374 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 SF3A3Q12874 501 aaKnown RBP eCLIP1.76□□□□□ -2.13
PTCH1-223ENST00000551623 EPS8Q12929 822 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 SELPLGQ14242 412 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 LASP1Q14847 261 aaKnown RBP1.76□□□□□ -2.13
PTCH1-223ENST00000551623 OR7A5Q15622 319 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 KCNJ8Q15842 424 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 FAM83EQ2M2I3 478 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 SLC36A2Q495M3 483 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 THEM4Q5T1C6 240 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 C1orf140Q5VVS0 124 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 TEX36Q5VZQ5 186 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 TYW3Q6IPR3 259 aaKnown RBP1.76□□□□□ -2.13
PTCH1-223ENST00000551623 NOXRED1Q6NXP6 359 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 TMEM53Q6P2H8 277 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 PLBD1Q6P4A8 553 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 KCTD18Q6PI47 426 aaPredicted RBP1.76□□□□□ -2.13
PTCH1-223ENST00000551623 DUX4L9Q6RFH8 374 aaPredicted RBP1.76□□□□□ -2.13
PTCH1-223ENST00000551623 FBXW12Q6X9E4 464 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 WDR88Q6ZMY6 472 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 CCDC121Q6ZUS5 278 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 BTN2A1Q7KYR7 527 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 OR2W3Q7Z3T1 314 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 NET1Q7Z628 596 aaPredicted RBP1.76□□□□□ -2.13
PTCH1-223ENST00000551623 PXKQ7Z7A4 578 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 LYPD6Q86Y78 171 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 KRTAP7-1Q8IUC3 87 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 ARMC8Q8IUR7 673 aa1.76□□□□□ -2.13
PTCH1-223ENST00000551623 ZNF440Q8IYI8 595 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms