RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 RGS18Q9NS28 235 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 ZMAT5Q9UDW3 170 aaKnown RBP2.51□□□□□ -2.01
VPS29-205ENST00000548539 HYOU1Q9Y4L1 999 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 ADAMTS13Q76LX8 1427 aa2.51□□□□□ -2.01
VPS29-205ENST00000548539 NACAE9PAV3 2078 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 IGHV1-69DA0A0B4J2H0 117 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 TMEM223A0PJW6 202 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 C5orf63A6NC05 138 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 ANKRD65E5RJM6 399 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 NDUFC2-KCTD14E9PQ53 114 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 RBFOX2O43251 390 aaKnown RBP eCLIP2.5□□□□□ -2.01
VPS29-205ENST00000548539 SEMA3DO95025 777 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 RHOXF2BP0C7M4 288 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 OR8U9P0C7N5 309 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 PSMC3P17980 439 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 LCN2P80188 198 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 CDK5Q00535 292 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 ZNF829Q3KNS6 432 aaPredicted RBP2.5□□□□□ -2.01
VPS29-205ENST00000548539 ZNF684Q5T5D7 378 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 AVPI1Q5T686 147 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 MLIPQ5VWP3 458 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 FBXW9Q5XUX1 488 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 PP632Q6XCG6 107 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 MRPL21Q7Z2W9 205 aaKnown RBP2.5□□□□□ -2.01
VPS29-205ENST00000548539 VTCN1Q7Z7D3 282 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 WDR86Q86TI4 376 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 CSGALNACT2Q8N6G5 542 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 OR4K5Q8NGD3 323 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 OR6N1Q8NGY5 312 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 UBALD1Q8TB05 177 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 SCGB3A2Q96PL1 93 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 LZTS2Q9BRK4 669 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 DEFB129Q9H1M3 183 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 DDX19AQ9NUU7 478 aaKnown RBP2.5□□□□□ -2.01
VPS29-205ENST00000548539 TMEM14AQ9Y6G1 99 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 MUC19Q7Z5P9 8384 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 LRP4O75096 1905 aa2.5□□□□□ -2.01
VPS29-205ENST00000548539 A0A0U1RQV1 116 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 PDZK1P1A8MUH7 402 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 ZNF705GA8MUZ8 300 aaPredicted RBP2.49□□□□□ -2.01
VPS29-205ENST00000548539 ERI3O43414 337 aaKnown RBP2.49□□□□□ -2.01
VPS29-205ENST00000548539 SLC16A7O60669 478 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 REM1O75628 298 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 SLC22A5O76082 557 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 VAMP5O95183 116 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 MBP02144 154 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 APCSP02743 223 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 CATP04040 527 aaKnown RBP2.49□□□□□ -2.01
VPS29-205ENST00000548539 MRPL3P09001 348 aaKnown RBP2.49□□□□□ -2.01
VPS29-205ENST00000548539 IGFBP3P17936 291 aaPredicted RBP2.49□□□□□ -2.01
VPS29-205ENST00000548539 PFN2P35080 140 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 BMI1P35226 326 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 GGT2P36268 569 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 TALDO1P37837 337 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 PPICP45877 212 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 CCNG1P51959 295 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 TFDP2Q14188 446 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 MPV17L2Q567V2 206 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 FAM71E1Q6IPT2 247 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 ULK3Q6PHR2 472 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 WDR82Q6UXN9 313 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 LINC00523Q86TU6 105 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 CDKL3Q8IVW4 592 aaPredicted RBP2.49□□□□□ -2.01
VPS29-205ENST00000548539 OR10W1Q8NGF6 305 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 OR5T3Q8NGG3 340 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 OR52P1PQ8NH57 321 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 ITFG1Q8TB96 612 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 FRZBQ92765 325 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 FGF23Q9GZV9 251 aaPredicted RBP2.49□□□□□ -2.01
VPS29-205ENST00000548539 IL22Q9GZX6 179 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 FBXO44Q9H4M3 255 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 RRAGDQ9NQL2 400 aaPredicted RBP2.49□□□□□ -2.01
VPS29-205ENST00000548539 COMMD3-BMI1R4GMX3 469 aa2.49□□□□□ -2.01
VPS29-205ENST00000548539 ADGRA3Q8IWK6 1321 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 ARPC4-TTLL3A0A0A6YYG9 625 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 IGHV1OR15-9A0A0B4J2B8 117 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 SLC22A20A6NK97 555 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 YIF1AO95070 293 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 RAB5AP20339 215 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 MSR1P21757 451 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 CD70P32970 193 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 CFHR2P36980 270 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 LINC00315P59091 139 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 EIF4EBP2Q13542 120 aaPredicted RBP2.48□□□□□ -2.01
VPS29-205ENST00000548539 RWDD4Q6NW29 188 aaKnown RBP2.48□□□□□ -2.01
VPS29-205ENST00000548539 H3F3CQ6NXT2 135 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 TMEM104Q8NE00 496 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 TCP10LQ8TDR4 215 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 HAUS1Q96CS2 278 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 NARS2Q96I59 477 aaKnown RBP2.48□□□□□ -2.01
VPS29-205ENST00000548539 BTN2A3PQ96KV6 586 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 TMEM243Q9BU79 118 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 CD209Q9NNX6 404 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 SIRT7Q9NRC8 400 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 ADA2Q9NZK5 511 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 KPTNQ9Y664 436 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 FHOD3Q2V2M9 1422 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 TNS2Q63HR2 1409 aa2.48□□□□□ -2.01
VPS29-205ENST00000548539 RSPH10B2B2RC85 870 aa2.47□□□□□ -2.01
VPS29-205ENST00000548539 KRBOX1C9JBD0 128 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms