RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 FAM206AQ9NX38 181 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 CSAG2Q9Y5P2 127 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 BLACEA4D250 179 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 LDLRAD4O15165 306 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 HEXBP07686 556 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 CLDN6P56747 220 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 SGCAQ16586 387 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 PLAC9Q5JTB6 97 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 CLEC9AQ6UXN8 241 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 OR4K15Q8NH41 348 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 TMED6Q8WW62 240 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 OR6C1Q96RD1 312 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 ACKR4Q9NPB9 350 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 GPN3Q9UHW5 284 aaPredicted RBP13.34□□□□□ -0.27
USP28-214ENST00000545540 NCOR1O75376 2440 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 F5H5K5 113 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 AGPAT2O15120 278 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 ZNF20P17024 532 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 ZBTB25P24278 435 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 CLRN1P58418 232 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 RRNAD1Q96FB5 475 aaKnown RBP13.34□□□□□ -0.27
USP28-214ENST00000545540 PCDHB10Q9UN67 800 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 DOCK7Q96N67 2140 aa13.34□□□□□ -0.27
USP28-214ENST00000545540 MSGN1A6NI15 193 aa13.33□□□□□ -0.27
USP28-214ENST00000545540 PIAS2O75928 621 aa13.33□□□□□ -0.27
USP28-214ENST00000545540 KNG1P01042 644 aa13.33□□□□□ -0.27
USP28-214ENST00000545540 ZNF121P58317 390 aaPredicted RBP13.33□□□□□ -0.27
USP28-214ENST00000545540 MICBQ29980 383 aa13.33□□□□□ -0.27
USP28-214ENST00000545540 TMEM176BQ3YBM2 270 aaPredicted RBP13.33□□□□□ -0.27
USP28-214ENST00000545540 TMEM244Q5VVB8 128 aa13.33□□□□□ -0.27
USP28-214ENST00000545540 SYT13Q7L8C5 426 aa13.33□□□□□ -0.27
USP28-214ENST00000545540 LYG2Q86SG7 212 aa13.33□□□□□ -0.27
USP28-214ENST00000545540 LHFPL5Q8TAF8 219 aa13.33□□□□□ -0.27
USP28-214ENST00000545540 AQP3Q92482 292 aa13.33□□□□□ -0.27
USP28-214ENST00000545540 ARHGAP5-AS1Q96IT6 56 aa13.33□□□□□ -0.27
USP28-214ENST00000545540 C1orf198Q9H425 327 aa13.33□□□□□ -0.27
USP28-214ENST00000545540 SLC2A4RGQ9NR83 387 aa13.33□□□□□ -0.27
USP28-214ENST00000545540 TNFSF18Q9UNG2 199 aa13.33□□□□□ -0.27
USP28-214ENST00000545540 LHFPL6Q9Y693 200 aa13.33□□□□□ -0.27
USP28-214ENST00000545540 VSTM2BA6NLU5 285 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 KRBOX1C9JBD0 128 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 SLC6A9P48067 706 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 ARFRP1Q13795 201 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 RAB12Q6IQ22 244 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 BRICD5Q6PL45 260 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 THAP6Q8TBB0 222 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 ZNF501Q96CX3 271 aaPredicted RBP13.33□□□□□ -0.28
USP28-214ENST00000545540 JSRP1Q96MG2 331 aaPredicted RBP13.33□□□□□ -0.28
USP28-214ENST00000545540 METTL7AQ9H8H3 244 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 CHST11Q9NPF2 352 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 PPP4R1LQ9P1A2 415 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 EFSO43281 561 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 ZNF208O43345 1280 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 HOXB5P09067 269 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 MGMTP16455 207 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 CASRP41180 1078 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 ZNF169Q14929 603 aaPredicted RBP13.33□□□□□ -0.28
USP28-214ENST00000545540 CLVS2Q5SYC1 327 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 PLXDC1Q8IUK5 500 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 ZNF581Q9P0T4 197 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 B3GAT1Q9P2W7 334 aa13.33□□□□□ -0.28
USP28-214ENST00000545540 OR6C76A6NM76 312 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 TOR1AO14656 332 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 RAB3AP20336 220 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 DHPSP49366 369 aaPredicted RBP13.32□□□□□ -0.28
USP28-214ENST00000545540 GUCA2BQ16661 112 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 INO80EQ8NBZ0 244 aaPredicted RBP13.32□□□□□ -0.28
USP28-214ENST00000545540 RNF133Q8WVZ7 376 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 RAB22AQ9UL26 194 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 RHBDD3Q9Y3P4 386 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 DUX1O43812 170 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 GLRA1P23415 457 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 DCAF7P61962 342 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 TDGQ13569 410 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 ZNF574Q6ZN55 896 aaPredicted RBP13.32□□□□□ -0.28
USP28-214ENST00000545540 OVCH2Q7RTZ1 564 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 NAXDQ8IW45 347 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 ZNF283Q8N7M2 679 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 OR8B12Q8NGG6 310 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 OR51F2Q8NH61 342 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 TMEM234Q8WY98 164 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 PHB2Q99623 299 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 SLC39A1Q9NY26 324 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 RASL12Q9NYN1 266 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 MRPS28Q9Y2Q9 187 aaKnown RBP13.32□□□□□ -0.28
USP28-214ENST00000545540 KNTC1P50748 2209 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 A0A1B0GTQ1 180 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 NAGAP17050 411 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 GALNSP34059 522 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 TMEM50BP56557 158 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 TMEM71Q6P5X7 295 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 ZNF441Q8N8Z8 693 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 OR5D14Q8NGL3 314 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 SAV1Q9H4B6 383 aaPredicted RBP13.32□□□□□ -0.28
USP28-214ENST00000545540 CYB5R1Q9UHQ9 305 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 FAM96BQ9Y3D0 163 aa13.32□□□□□ -0.28
USP28-214ENST00000545540 A0A1B0GTI1 187 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 A0A1W2PQD3 144 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 LIPT2A6NK58 231 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 TMEM200CA6NKL6 621 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms