RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 PRPF19Q9UMS4 504 aaKnown RBP2.83□□□□□ -1.96
CD44-217ENST00000525348 RASD1Q9Y272 281 aa2.83□□□□□ -1.96
CD44-217ENST00000525348 KCNIP3Q9Y2W7 256 aa2.83□□□□□ -1.96
CD44-217ENST00000525348 PEX16Q9Y5Y5 336 aa2.83□□□□□ -1.96
CD44-217ENST00000525348 URGCP-MRPS24S4R325 110 aa2.83□□□□□ -1.96
CD44-217ENST00000525348 METP08581 1390 aa2.83□□□□□ -1.96
CD44-217ENST00000525348 RPRD2Q5VT52 1461 aaKnown RBP2.83□□□□□ -1.96
CD44-217ENST00000525348 SBF2Q86WG5 1849 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 DENND4AQ7Z401 1863 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 MYH7BA7E2Y1 1941 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 MYH3P11055 1940 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 TRAV26-1A0A087WT03 109 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 KLF18A0A0U1RQI7 1052 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 CIB4A0PJX0 185 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 OOEPA6NGQ2 149 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 TRDCB7Z8K6 153 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 H3BN98 237 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 H7C2Y5 167 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 KCNK1O00180 336 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 KPNA3O00505 521 aaPredicted RBP2.82□□□□□ -1.96
CD44-217ENST00000525348 COPEO14579 308 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 TP53I11O14683 189 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 ADAM12O43184 909 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 EMC8O43402 210 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 DUX1O43812 170 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 KLRC4O43908 158 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 KIAA0513O60268 411 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 FCMRO60667 390 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 MRPS14O60783 128 aaKnown RBP2.82□□□□□ -1.96
CD44-217ENST00000525348 SPAG7O75391 227 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 BANF1O75531 89 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 LYPLA1O75608 230 aaPredicted RBP2.82□□□□□ -1.96
CD44-217ENST00000525348 UPK3AO75631 287 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 UGT2B17O75795 530 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 OR2J2O76002 312 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 CTDNEP1O95476 244 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 SLC16A8O95907 504 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 SERPINA1P01009 418 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 C1QBP02746 253 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 CXCL10P02778 98 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 NUDT17P0C025 328 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 METTL15P1P0C7V9 234 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 UBCP0CG48 685 aaKnown RBP2.82□□□□□ -1.96
CD44-217ENST00000525348 RRASP10301 218 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 SCGB1A1P11684 91 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 PGAM1P18669 254 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 GABRR1P24046 479 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 DPP4P27487 766 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 DLSTP36957 453 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 PMELP40967 661 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 CD200P41217 278 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 BRCC3P46736 316 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 RGRP47804 291 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 RAB9AP51151 201 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 EFNA3P52797 238 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 SNU13P55769 128 aaKnown RBP2.82□□□□□ -1.96
CD44-217ENST00000525348 MAXP61244 160 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 ST8SIA6P61647 398 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 YWHAGP61981 247 aaKnown RBP eCLIP2.82□□□□□ -1.96
CD44-217ENST00000525348 RPL23AP62750 156 aaKnown RBP2.82□□□□□ -1.96
CD44-217ENST00000525348 ADARB1P78563 741 aaKnown RBP2.82□□□□□ -1.96
CD44-217ENST00000525348 CKAP4Q07065 602 aaKnown RBP2.82□□□□□ -1.96
CD44-217ENST00000525348 RGS1Q08116 209 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 MED21Q13503 144 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 DPYSL3Q14195 570 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 ZNF846Q147U1 533 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 SPHARQ15513 63 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 MICAQ29983 383 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 ZNF630Q2M218 657 aaPredicted RBP2.82□□□□□ -1.96
CD44-217ENST00000525348 VPS26BQ4G0F5 336 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 ZNF658BQ4V348 819 aaPredicted RBP2.82□□□□□ -1.96
CD44-217ENST00000525348 AKIRIN2Q53H80 203 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 PIGGQ5H8A4 983 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 CLLU1Q5K131 121 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 PRAMEF7Q5VXH5 474 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 TTC23Q5W5X9 447 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 DPY19L2P2Q6ZN68 376 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 LINC00299Q6ZSB3 139 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 PAQR9Q6ZVX9 377 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 EIF3MQ7L2H7 374 aaKnown RBP2.82□□□□□ -1.96
CD44-217ENST00000525348 TCF24Q7RTU0 167 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 GRINAQ7Z429 371 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 TMEM144Q7Z5S9 345 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 COMMD7Q86VX2 200 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 CALHM1Q8IU99 346 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 CTAGE3PQ8IX95 158 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 KLHDC8AQ8IYD2 350 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 CPNE9Q8IYJ1 553 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 BATF2Q8N1L9 274 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 C2orf73Q8N5S3 287 aaPredicted RBP2.82□□□□□ -1.96
CD44-217ENST00000525348 CLDN22Q8N7P3 220 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 HSD17B11Q8NBQ5 300 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 TMEM185AQ8NFB2 350 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 OR51D1Q8NGF3 324 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 OR51L1Q8NGJ5 315 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 CD200R1Q8TD46 325 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 BLOC1S5Q8TDH9 187 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 ABHD3Q8WU67 409 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 ACOT12Q8WYK0 555 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 NRGNQ92686 78 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms