RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 LYVE1Q9Y5Y7 322 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 SOX21Q9Y651 276 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-211ENST00000491233 COMMD3-BMI1R4GMX3 469 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 CD300LBA8K4G0 201 aa11.38□□□□□ -0.59
COL6A3-211ENST00000491233 BHLHE40O14503 412 aa11.38□□□□□ -0.59
COL6A3-211ENST00000491233 PLATP00750 562 aa11.38□□□□□ -0.59
COL6A3-211ENST00000491233 RNASE1P07998 156 aaKnown RBP11.38□□□□□ -0.59
COL6A3-211ENST00000491233 PPIAL4GP0DN37 164 aa11.38□□□□□ -0.59
COL6A3-211ENST00000491233 CA6P23280 308 aa11.38□□□□□ -0.59
COL6A3-211ENST00000491233 MXRA7P84157 204 aa11.38□□□□□ -0.59
COL6A3-211ENST00000491233 HOXA4Q00056 320 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-211ENST00000491233 MPPED2Q15777 294 aa11.38□□□□□ -0.59
COL6A3-211ENST00000491233 WDR25Q64LD2 544 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-211ENST00000491233 C16orf89Q6UX73 402 aa11.38□□□□□ -0.59
COL6A3-211ENST00000491233 DEFB107AQ8IZN7 70 aa11.38□□□□□ -0.59
COL6A3-211ENST00000491233 SLC37A3Q8NCC5 494 aa11.38□□□□□ -0.59
COL6A3-211ENST00000491233 OR51L1Q8NGJ5 315 aa11.38□□□□□ -0.59
COL6A3-211ENST00000491233 OR9Q1Q8NGQ5 310 aa11.38□□□□□ -0.59
COL6A3-211ENST00000491233 OR2T4Q8NH00 348 aa11.38□□□□□ -0.59
COL6A3-211ENST00000491233 ZNRF4Q8WWF5 429 aa11.38□□□□□ -0.59
COL6A3-211ENST00000491233 ERGIC1Q969X5 290 aa11.38□□□□□ -0.59
COL6A3-211ENST00000491233 DDOQ99489 341 aa11.38□□□□□ -0.59
COL6A3-211ENST00000491233 NUDT16L1Q9BRJ7 211 aaKnown RBP11.38□□□□□ -0.59
COL6A3-211ENST00000491233 TBC1D23Q9NUY8 699 aa11.38□□□□□ -0.59
COL6A3-211ENST00000491233 NOP16Q9Y3C1 178 aaKnown RBP11.38□□□□□ -0.59
COL6A3-211ENST00000491233 MDFIC2A0A1B0GVS7 189 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 C5orf63A6NC05 138 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 GGT3PA6NGU5 568 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 TNFRSF11BO00300 401 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 PHYHO14832 338 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 KRT36O76013 467 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 SPARCP09486 303 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 OTX1P32242 354 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-211ENST00000491233 MTNR1AP48039 350 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 ZNF92Q03936 586 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 GLYATL3Q5SZD4 288 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 ZNF770Q6IQ21 691 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-211ENST00000491233 CYP2R1Q6VVX0 501 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 C9orf139Q6ZV77 190 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 DCXRQ7Z4W1 244 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 FITM2Q8N6M3 262 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 BOLLQ8N9W6 283 aaKnown RBP11.37□□□□□ -0.59
COL6A3-211ENST00000491233 OR4C15Q8NGM1 316 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 COPS4Q9BT78 406 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 ZNF747Q9BV97 191 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 SLC22A4Q9H015 551 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 MMADHCQ9H3L0 296 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-211ENST00000491233 FN3KRPQ9HA64 309 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 NDE1Q9NXR1 346 aa11.37□□□□□ -0.59
COL6A3-211ENST00000491233 KIR2DS1A0A191URI9 304 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 C22orf46C9J442 243 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 CLDN34H7C241 214 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 ATP8B1O43520 1251 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 CCNB2O95067 398 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 SLC2A1P11166 492 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 PSMB10P40306 273 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 MAGEA2P43356 314 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 ENTPD1P49961 510 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 PRKXP51817 358 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 HMGA2P52926 109 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 FGF12P61328 243 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 GNGT1P63211 74 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 PPP1R8Q12972 351 aaKnown RBP11.36□□□□□ -0.59
COL6A3-211ENST00000491233 CRMP1Q14194 572 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 SLC9A3R2Q15599 337 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 SPATS1Q496A3 300 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 ZNF362Q5T0B9 420 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-211ENST00000491233 SHISA2Q6UWI4 295 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 DRAM2Q6UX65 266 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 BRD3OSQ6XYD6 125 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 ZNF841Q6ZN19 808 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 RASSF6Q6ZTQ3 369 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 LINC00471Q8N535 108 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 AQP11Q8NBQ7 271 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 OR56B2PQ8NGI1 322 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 OR4Q3Q8NH05 313 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 SLC25A28Q96A46 364 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 SLAMF6Q96DU3 332 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 TECTBQ96PL2 329 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 TSSK6Q9BXA6 273 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 IL20Q9NYY1 176 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 RNF7Q9UBF6 113 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 CTSZQ9UBR2 303 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 ARL2BPQ9Y2Y0 163 aa11.36□□□□□ -0.59
COL6A3-211ENST00000491233 A6NLC8 198 aa11.35□□□□□ -0.59
COL6A3-211ENST00000491233 C3orf80F5H4A9 247 aa11.35□□□□□ -0.59
COL6A3-211ENST00000491233 LGALS8O00214 317 aa11.35□□□□□ -0.59
COL6A3-211ENST00000491233 TMPRSS2O15393 492 aa11.35□□□□□ -0.59
COL6A3-211ENST00000491233 ENSAO43768 121 aaKnown RBP11.35□□□□□ -0.59
COL6A3-211ENST00000491233 DCTN3O75935 186 aa11.35□□□□□ -0.59
COL6A3-211ENST00000491233 SOX14O95416 240 aa11.35□□□□□ -0.59
COL6A3-211ENST00000491233 PTBP3O95758 552 aaKnown RBP11.35□□□□□ -0.59
COL6A3-211ENST00000491233 GASTP01350 101 aa11.35□□□□□ -0.59
COL6A3-211ENST00000491233 GYPBP06028 91 aa11.35□□□□□ -0.59
COL6A3-211ENST00000491233 GYS2P54840 703 aa11.35□□□□□ -0.59
COL6A3-211ENST00000491233 TAF13Q15543 124 aa11.35□□□□□ -0.59
COL6A3-211ENST00000491233 SFRP4Q6FHJ7 346 aaPredicted RBP11.35□□□□□ -0.59
COL6A3-211ENST00000491233 LNX2Q8N448 690 aa11.35□□□□□ -0.59
COL6A3-211ENST00000491233 ZNF511Q8NB15 262 aa11.35□□□□□ -0.59
COL6A3-211ENST00000491233 TAF15Q92804 592 aaKnown RBP eCLIP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms