RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 RAB12Q6IQ22 244 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 TBPL2Q6SJ96 375 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 CASP12Q6UXS9 341 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 ZCCHC23Q6ZST2 131 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 PHF13Q86YI8 300 aaPredicted RBP2.39□□□□□ -2.03
LINC01040-201ENST00000425048 FUNDC1Q8IVP5 155 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 FAM71AQ8IYT1 594 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 TMEM61Q8N0U2 210 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 RNF148Q8N7C7 305 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 UXS1Q8NBZ7 420 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 RELL2Q8NC24 303 aaPredicted RBP2.39□□□□□ -2.03
LINC01040-201ENST00000425048 DUSP18Q8NEJ0 188 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 WDR36Q8NI36 951 aaKnown RBP2.39□□□□□ -2.03
LINC01040-201ENST00000425048 TRMT10AQ8TBZ6 339 aaKnown RBP2.39□□□□□ -2.03
LINC01040-201ENST00000425048 ZNF431Q8TF32 576 aaPredicted RBP2.39□□□□□ -2.03
LINC01040-201ENST00000425048 CANT1Q8WVQ1 401 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 TADA1Q96BN2 335 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 ULK4Q96C45 1275 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 TM4SF18Q96CE8 201 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 CENPNQ96H22 339 aaPredicted RBP2.39□□□□□ -2.03
LINC01040-201ENST00000425048 NARS2Q96I59 477 aaKnown RBP2.39□□□□□ -2.03
LINC01040-201ENST00000425048 ZNF514Q96K75 400 aaPredicted RBP2.39□□□□□ -2.03
LINC01040-201ENST00000425048 TRNT1Q96Q11 434 aaKnown RBP2.39□□□□□ -2.03
LINC01040-201ENST00000425048 SLC38A2Q96QD8 506 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 MBOAT4Q96T53 435 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 PDCD10Q9BUL8 212 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 GGACTQ9BVM4 153 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 NKX6-2Q9C056 277 aaPredicted RBP2.39□□□□□ -2.03
LINC01040-201ENST00000425048 ZNF436Q9C0F3 470 aaPredicted RBP2.39□□□□□ -2.03
LINC01040-201ENST00000425048 SRRQ9GZT4 340 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 NXF3Q9H4D5 531 aaKnown RBP2.39□□□□□ -2.03
LINC01040-201ENST00000425048 DUSP21Q9H596 190 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 PTGES2Q9H7Z7 377 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 SIRT7Q9NRC8 400 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 CHRAC1Q9NRG0 131 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 COX16Q9P0S2 106 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 NFKBIL1Q9UBC1 381 aaPredicted RBP2.39□□□□□ -2.03
LINC01040-201ENST00000425048 DNAJB9Q9UBS3 223 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 SCP2D1Q9UJQ7 156 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 ANAPC7Q9UJX3 599 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 DNPEPQ9ULA0 475 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 MAB21L2Q9Y586 359 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 SIGLEC1Q9BZZ2 1709 aa2.39□□□□□ -2.03
LINC01040-201ENST00000425048 PDCD11Q14690 1871 aaKnown RBP2.39□□□□□ -2.03
LINC01040-201ENST00000425048 COL1A1P02452 1464 aaPredicted RBP2.39□□□□□ -2.03
LINC01040-201ENST00000425048 MYO18AQ92614 2054 aaKnown RBP2.38□□□□□ -2.03
LINC01040-201ENST00000425048 PARP14Q460N5 1801 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 SBF2Q86WG5 1849 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 GNG14A0A1W2PPG7 69 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 C7orf66A4D0T2 115 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 FAM149AA5PLN7 773 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 PRORSD1PA6NEY8 169 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 PP2D1A8MPX8 630 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 IQCF5A8MTL0 148 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 ZNF879B4DU55 563 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 TMEM238C9JI98 176 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 UPK1AO00322 258 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 KPNA3O00505 521 aaPredicted RBP2.38□□□□□ -2.03
LINC01040-201ENST00000425048 SCAMP2O15127 329 aaKnown RBP2.38□□□□□ -2.03
LINC01040-201ENST00000425048 ARPC5O15511 151 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 CFLARO15519 480 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 CHP2O43745 196 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 CRCPO75575 148 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 SRP72O76094 671 aaKnown RBP2.38□□□□□ -2.03
LINC01040-201ENST00000425048 AKR7A3O95154 331 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 C6orf47O95873 294 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 LALBAP00709 142 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 APOC3P02656 99 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 SERPINE1P05121 402 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 CSF3P09919 207 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 OR8U8P0C7N1 319 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 RD3LP0DJH9 198 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 THRBP10828 461 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 RAB3BP20337 219 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 GADD45AP24522 165 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 PAX6P26367 422 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 HOXA9P31269 272 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 FMO3P31513 532 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 CA5AP35218 305 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 SAA4P35542 130 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 RPS10P46783 165 aaKnown RBP2.38□□□□□ -2.03
LINC01040-201ENST00000425048 TGM4P49221 684 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 RGS6P49758 472 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 SMSP52788 366 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 METAP1P53582 386 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 NAPAP54920 295 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 ACTBP60709 375 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 HERVK_113P61574 105 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 TIMM10P62072 90 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 ACTA2P62736 377 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 SKP1P63208 163 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 ACTG1P63261 375 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 ACTG2P63267 376 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 ACTC1P68032 377 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 ACTA1P68133 377 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 SLC35A2P78381 396 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 SCN1BQ07699 218 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 C2orf80Q0P641 193 aa2.38□□□□□ -2.03
LINC01040-201ENST00000425048 DAZ2Q13117 558 aaKnown RBP2.38□□□□□ -2.03
LINC01040-201ENST00000425048 SKP2Q13309 424 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms