RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 TMEM19Q96HH6 336 aa8.84□□□□□ -0.99
USP54-205ENST00000424265 TMEM38AQ9H6F2 299 aa8.84□□□□□ -0.99
USP54-205ENST00000424265 ATG4BQ9Y4P1 393 aa8.84□□□□□ -0.99
USP54-205ENST00000424265 ACOT7O00154 380 aa8.84□□□□□ -0.99
USP54-205ENST00000424265 HMGN2P05204 90 aaKnown RBP8.84□□□□□ -0.99
USP54-205ENST00000424265 CSN2P05814 226 aa8.84□□□□□ -0.99
USP54-205ENST00000424265 CELA2BP08218 269 aaPredicted RBP8.84□□□□□ -0.99
USP54-205ENST00000424265 TACR1P25103 407 aa8.84□□□□□ -0.99
USP54-205ENST00000424265 SFXN4Q6P4A7 337 aa8.84□□□□□ -0.99
USP54-205ENST00000424265 PRSS45Q7RTY3 260 aa8.84□□□□□ -0.99
USP54-205ENST00000424265 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.84□□□□□ -0.99
USP54-205ENST00000424265 ZNF664Q8N3J9 261 aa8.84□□□□□ -0.99
USP54-205ENST00000424265 RAB8BQ92930 207 aa8.84□□□□□ -0.99
USP54-205ENST00000424265 S100A16Q96FQ6 103 aaKnown RBP8.84□□□□□ -0.99
USP54-205ENST00000424265 TUBA4BQ9H853 241 aa8.84□□□□□ -0.99
USP54-205ENST00000424265 C19orf53Q9UNZ5 99 aaPredicted RBP8.84□□□□□ -0.99
USP54-205ENST00000424265 ZFP30Q9Y2G7 519 aa8.84□□□□□ -0.99
USP54-205ENST00000424265 ANKRD12Q6UB98 2062 aa8.83□□□□□ -1
USP54-205ENST00000424265 SYT7O43581 403 aa8.83□□□□□ -1
USP54-205ENST00000424265 MT-ND5P03915 603 aa8.83□□□□□ -1
USP54-205ENST00000424265 CHRM4P08173 479 aa8.83□□□□□ -1
USP54-205ENST00000424265 SELENOVP59797 346 aa8.83□□□□□ -1
USP54-205ENST00000424265 MAPK14Q16539 360 aa8.83□□□□□ -1
USP54-205ENST00000424265 RHBDD2Q6NTF9 364 aa8.83□□□□□ -1
USP54-205ENST00000424265 ARL9Q6T311 187 aa8.83□□□□□ -1
USP54-205ENST00000424265 OR52R1Q8NGF1 315 aa8.83□□□□□ -1
USP54-205ENST00000424265 RCC1LQ96I51 464 aaKnown RBP8.83□□□□□ -1
USP54-205ENST00000424265 ZNF48Q96MX3 618 aaPredicted RBP8.83□□□□□ -1
USP54-205ENST00000424265 SF3B5Q9BWJ5 86 aaKnown RBP8.83□□□□□ -1
USP54-205ENST00000424265 A4GALTQ9NPC4 353 aa8.83□□□□□ -1
USP54-205ENST00000424265 C13orf42A0A1B0GVH6 325 aa8.83□□□□□ -1
USP54-205ENST00000424265 RCBTB2O95199 551 aa8.83□□□□□ -1
USP54-205ENST00000424265 GTF2F2P13984 249 aa8.83□□□□□ -1
USP54-205ENST00000424265 CEACAM8P31997 349 aaPredicted RBP8.83□□□□□ -1
USP54-205ENST00000424265 CNN2Q99439 309 aaKnown RBP8.83□□□□□ -1
USP54-205ENST00000424265 MACROD1Q9BQ69 325 aa8.83□□□□□ -1
USP54-205ENST00000424265 FKRPQ9H9S5 495 aa8.83□□□□□ -1
USP54-205ENST00000424265 CBLCQ9ULV8 474 aa8.83□□□□□ -1
USP54-205ENST00000424265 MED31Q9Y3C7 131 aa8.83□□□□□ -1
USP54-205ENST00000424265 A0A1W2PPV9 198 aa8.83□□□□□ -1
USP54-205ENST00000424265 OR5H14A6NHG9 310 aa8.83□□□□□ -1
USP54-205ENST00000424265 LDB3O75112 727 aa8.83□□□□□ -1
USP54-205ENST00000424265 ETFAP13804 333 aa8.83□□□□□ -1
USP54-205ENST00000424265 TUBG1P23258 451 aa8.83□□□□□ -1
USP54-205ENST00000424265 PRPS1P60891 318 aa8.83□□□□□ -1
USP54-205ENST00000424265 PAX5Q02548 391 aa8.83□□□□□ -1
USP54-205ENST00000424265 DMWDQ09019 674 aa8.83□□□□□ -1
USP54-205ENST00000424265 TMEM69Q5SWH9 247 aa8.83□□□□□ -1
USP54-205ENST00000424265 ZNF620Q6ZNG0 422 aa8.83□□□□□ -1
USP54-205ENST00000424265 CEACAM19Q7Z692 300 aa8.83□□□□□ -1
USP54-205ENST00000424265 SLC41A2Q96JW4 573 aa8.83□□□□□ -1
USP54-205ENST00000424265 DMRTA2Q96SC8 542 aa8.83□□□□□ -1
USP54-205ENST00000424265 NIPSNAP1Q9BPW8 284 aa8.83□□□□□ -1
USP54-205ENST00000424265 NUDT9Q9BW91 350 aa8.83□□□□□ -1
USP54-205ENST00000424265 PITPNC1Q9UKF7 332 aa8.83□□□□□ -1
USP54-205ENST00000424265 ANKRD20A5PA0PJZ0 165 aa8.83□□□□□ -1
USP54-205ENST00000424265 A6NIZ1 184 aa8.83□□□□□ -1
USP54-205ENST00000424265 GJE1A6NN92 205 aa8.83□□□□□ -1
USP54-205ENST00000424265 FAAHO00519 579 aa8.83□□□□□ -1
USP54-205ENST00000424265 ACTL6AO96019 429 aa8.83□□□□□ -1
USP54-205ENST00000424265 S100GP29377 79 aa8.83□□□□□ -1
USP54-205ENST00000424265 CEACAM6P40199 344 aa8.83□□□□□ -1
USP54-205ENST00000424265 HBA1P69905 142 aa8.83□□□□□ -1
USP54-205ENST00000424265 OR7A5Q15622 319 aa8.83□□□□□ -1
USP54-205ENST00000424265 TMEM255AQ5JRV8 349 aa8.83□□□□□ -1
USP54-205ENST00000424265 DCST2Q5T1A1 773 aa8.83□□□□□ -1
USP54-205ENST00000424265 C1QL4Q86Z23 238 aa8.83□□□□□ -1
USP54-205ENST00000424265 SECTM1Q8WVN6 248 aa8.83□□□□□ -1
USP54-205ENST00000424265 NUDT22Q9BRQ3 303 aa8.83□□□□□ -1
USP54-205ENST00000424265 PRRG4Q9BZD6 226 aa8.83□□□□□ -1
USP54-205ENST00000424265 SELENOIQ9C0D9 397 aa8.83□□□□□ -1
USP54-205ENST00000424265 NRSN2Q9GZP1 204 aa8.83□□□□□ -1
USP54-205ENST00000424265 GLIPR2Q9H4G4 154 aa8.83□□□□□ -1
USP54-205ENST00000424265 SHISA7A6NL88 538 aa8.82□□□□□ -1
USP54-205ENST00000424265 OPN1SWP03999 348 aa8.82□□□□□ -1
USP54-205ENST00000424265 TCN2P20062 427 aa8.82□□□□□ -1
USP54-205ENST00000424265 CTSSP25774 331 aa8.82□□□□□ -1
USP54-205ENST00000424265 PTH2RP49190 550 aa8.82□□□□□ -1
USP54-205ENST00000424265 UBE2G2P60604 165 aa8.82□□□□□ -1
USP54-205ENST00000424265 MEF2DQ14814 521 aa8.82□□□□□ -1
USP54-205ENST00000424265 JOSD1Q15040 202 aaPredicted RBP8.82□□□□□ -1
USP54-205ENST00000424265 KCNMB1Q16558 191 aa8.82□□□□□ -1
USP54-205ENST00000424265 ELFN2Q5R3F8 820 aa8.82□□□□□ -1
USP54-205ENST00000424265 LRRC56Q8IYG6 542 aaPredicted RBP8.82□□□□□ -1
USP54-205ENST00000424265 OR52I1Q8NGK6 324 aa8.82□□□□□ -1
USP54-205ENST00000424265 MCHR2Q969V1 340 aa8.82□□□□□ -1
USP54-205ENST00000424265 LCORQ96JN0 433 aaPredicted RBP8.82□□□□□ -1
USP54-205ENST00000424265 MCHR1Q99705 422 aa8.82□□□□□ -1
USP54-205ENST00000424265 TXN2Q99757 166 aa8.82□□□□□ -1
USP54-205ENST00000424265 SLC6A7Q99884 636 aa8.82□□□□□ -1
USP54-205ENST00000424265 ARHGAP9Q9BRR9 750 aa8.82□□□□□ -1
USP54-205ENST00000424265 CNTNAP3Q9BZ76 1288 aa8.82□□□□□ -1
USP54-205ENST00000424265 CSTL1Q9H114 145 aa8.82□□□□□ -1
USP54-205ENST00000424265 GPX2P18283 190 aa8.82□□□□□ -1
USP54-205ENST00000424265 POLR2HP52434 150 aaKnown RBP8.82□□□□□ -1
USP54-205ENST00000424265 DLK1P80370 383 aa8.82□□□□□ -1
USP54-205ENST00000424265 STPG1Q5TH74 334 aa8.82□□□□□ -1
USP54-205ENST00000424265 MRPL52Q86TS9 123 aaKnown RBP8.82□□□□□ -1
USP54-205ENST00000424265 HIST3H2BBQ8N257 126 aa8.82□□□□□ -1
USP54-205ENST00000424265 ZNF738Q8NE65 137 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms