RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 TRIM63Q969Q1 353 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 SPTSSAQ969W0 71 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 TRIB1Q96RU8 372 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 MRI1Q9BV20 369 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 NOX3Q9HBY0 568 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 UPB1Q9UBR1 384 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 ETV7Q9Y603 341 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 MYO7BQ6PIF6 2116 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 SS18L1O75177 396 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-202ENST00000372405 UBL3O95164 117 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 FARS2O95363 451 aaKnown RBP12.03□□□□□ -0.48
PTPRF-202ENST00000372405 SDHBP21912 280 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 GNALP38405 381 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 HTR5AP47898 357 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 EFNB2P52799 333 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 DEFA1P59665 94 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 DEFA3P59666 94 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 PCBD1P61457 104 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 ECH1Q13011 328 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 ASAH1Q13510 395 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 GUSBP1Q15486 140 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 RAB11BQ15907 218 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 PLEKHN1Q494U1 663 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-202ENST00000372405 PABPC1L2AQ5JQF8 200 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 GLYATL3Q5SZD4 288 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 PYHIN1Q6K0P9 492 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 DRAM2Q6UX65 266 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 Q6ZSR3 168 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 DOK3Q7L591 496 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 RNF144BQ7Z419 303 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 GCNT2Q8N0V5 402 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 UBE2J2Q8N2K1 259 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 OR1M1Q8NGA1 313 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 OR52N4Q8NGI2 321 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 SYNPRQ8TBG9 265 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 GMPPAQ96IJ6 420 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-202ENST00000372405 LUZP4Q9P127 313 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 PTPRQQ9UMZ3 2332 aa12.03□□□□□ -0.48
PTPRF-202ENST00000372405 IL18BPO95998 194 aa12.02□□□□□ -0.49
PTPRF-202ENST00000372405 HLA-HP01893 362 aa12.02□□□□□ -0.49
PTPRF-202ENST00000372405 OR3A2P47893 321 aa12.02□□□□□ -0.49
PTPRF-202ENST00000372405 POU3F4P49335 361 aa12.02□□□□□ -0.49
PTPRF-202ENST00000372405 GLT8D1Q68CQ7 371 aa12.02□□□□□ -0.49
PTPRF-202ENST00000372405 P4HA3Q7Z4N8 544 aa12.02□□□□□ -0.49
PTPRF-202ENST00000372405 NRARPQ7Z6K4 114 aa12.02□□□□□ -0.49
PTPRF-202ENST00000372405 OR5AS1Q8N127 324 aa12.02□□□□□ -0.49
PTPRF-202ENST00000372405 OR13C9Q8NGT0 318 aa12.02□□□□□ -0.49
PTPRF-202ENST00000372405 FAM3DQ96BQ1 224 aa12.02□□□□□ -0.49
PTPRF-202ENST00000372405 SGK3Q96BR1 496 aa12.02□□□□□ -0.49
PTPRF-202ENST00000372405 SARAFQ96BY9 339 aa12.02□□□□□ -0.49
PTPRF-202ENST00000372405 HAVCR1Q96D42 359 aa12.02□□□□□ -0.49
PTPRF-202ENST00000372405 NEDD4LQ96PU5 975 aa12.02□□□□□ -0.49
PTPRF-202ENST00000372405 C11orf54Q9H0W9 315 aaPredicted RBP12.02□□□□□ -0.49
PTPRF-202ENST00000372405 RHBDL2Q9NX52 303 aa12.02□□□□□ -0.49
PTPRF-202ENST00000372405 IGF2RP11717 2491 aa12.02□□□□□ -0.49
PTPRF-202ENST00000372405 MEGF11A6BM72 1044 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 APOC1P02654 83 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 HTR2CP28335 458 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 BDKRB2P30411 391 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 NR4A2P43354 598 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 TPTEP56180 551 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 SCAND1P57086 179 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 C2orf76Q3KRA6 126 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 C1orf100Q5SVJ3 147 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 FBXW9Q5XUX1 488 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 CCBE1Q6UXH8 406 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-202ENST00000372405 C9orf106Q8NAJ2 232 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 OR4D6Q8NGJ1 314 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 OR5D14Q8NGL3 314 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 OR2AE1Q8NHA4 323 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 ABHD17AQ96GS6 310 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 B3GNT2Q9NY97 397 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 MRPS7Q9Y2R9 242 aaKnown RBP12.01□□□□□ -0.49
PTPRF-202ENST00000372405 V9GYS6 101 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 PIEZO2Q9H5I5 2752 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 DSPP15924 2871 aaKnown RBP12.01□□□□□ -0.49
PTPRF-202ENST00000372405 MKRN2OSH3BPM6 223 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 K7ENP7 123 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 ZNF20P17024 532 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 CDK2P24941 298 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 PTH2RP49190 550 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 ART1P52961 327 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 DGCR2P98153 550 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 ACSF3Q4G176 576 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-202ENST00000372405 TRIQKQ629K1 86 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 INO80CQ6PI98 192 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-202ENST00000372405 JAGN1Q8N5M9 183 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 NKAIN3Q8N8D7 197 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 OR52H1Q8NGJ2 320 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 OR6M1Q8NGM8 313 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 RAB40AQ8WXH6 277 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 GCDHQ92947 438 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-202ENST00000372405 ZFP3Q96NJ6 502 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 THAP7Q9BT49 309 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-202ENST00000372405 TMEM138Q9NPI0 162 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 DKK4Q9UBT3 224 aa12.01□□□□□ -0.49
PTPRF-202ENST00000372405 LOC100509620A0A075B734 347 aa12□□□□□ -0.49
PTPRF-202ENST00000372405 IGKV1-9A0A0C4DH69 117 aa12□□□□□ -0.49
PTPRF-202ENST00000372405 LOC100289279A0A1B0GTE1 492 aa12□□□□□ -0.49
PTPRF-202ENST00000372405 TMEM272A0A1B0GTI8 110 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms