RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 HLA-HP01893 362 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 ITGA5P08648 1049 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 CTSSP25774 331 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 SDC2P34741 201 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 ZNF45Q02386 682 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 SLC36A2Q495M3 483 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 HIKESHIQ53FT3 197 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 Q5BKY6 102 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 TMEM91Q6ZNR0 172 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 LUZP2Q86TE4 346 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 NR2C2APQ86WQ0 139 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 CCDC36Q8IYA8 594 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 NKAIN3Q8N8D7 197 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 OR10S1Q8NGN2 331 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 AKR7LQ8NHP1 331 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 MBD2Q9UBB5 411 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 OSGIN2Q9Y236 505 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 TIMM10BQ9Y5J6 103 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 USP24Q9UPU5 2620 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 A0A0X1KG70 313 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 IQCMA0A1B0GVH7 501 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 TMEM269A0A1B0GVZ9 245 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 DOK2O60496 412 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 CCNKO75909 580 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 FGF9P31371 208 aaPredicted RBP8.78□□□□□ -1
HMGB3-201ENST00000325307 TNFSF8P32971 234 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 SOX6P35712 828 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 GDI2P50395 445 aaKnown RBP8.78□□□□□ -1
HMGB3-201ENST00000325307 CAV3P56539 151 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 CDK5R1Q15078 307 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 GHSRQ92847 366 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 WBP1Q96G27 269 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 ATF6BQ99941 703 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 PDCD1LG2Q9BQ51 273 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 SFXN3Q9BWM7 321 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 PLSCR4Q9NRQ2 329 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 PEX16Q9Y5Y5 336 aa8.78□□□□□ -1
HMGB3-201ENST00000325307 INTS1Q8N201 2190 aaKnown RBP8.78□□□□□ -1
HMGB3-201ENST00000325307 F5H5K5 113 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 LOC110117498-PIK3R3F6TDL0 507 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 IL18BPO95998 194 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 IL1AP01583 271 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 IGHV1-2P23083 117 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 HOXC12P31275 282 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 CEACAM8P31997 349 aaPredicted RBP8.77□□□□□ -1
HMGB3-201ENST00000325307 SLC6A9P48067 706 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 HNRNPA0Q13151 305 aaKnown RBP8.77□□□□□ -1
HMGB3-201ENST00000325307 TSC22D1Q15714 1073 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 ELFN2Q5R3F8 820 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 ZNF774Q6NX45 483 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 ANKRD16Q6P6B7 361 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 ZNF283Q8N7M2 679 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 ZNF676Q8N7Q3 588 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 OR1K1Q8NGR3 316 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 HAVCR2Q8TDQ0 301 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 GON7Q9BXV9 100 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 HDHD5Q9BXW7 423 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 PPIL3Q9H2H8 161 aaKnown RBP8.77□□□□□ -1
HMGB3-201ENST00000325307 ABCB10Q9NRK6 738 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 ST6GALNAC2Q9UJ37 374 aa8.77□□□□□ -1
HMGB3-201ENST00000325307 A0A1B0GWJ7 208 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 H3BSH0 61 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 SSX4O60224 188 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 CLN5O75503 358 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 NANOS3P60323 173 aaKnown RBP8.77□□□□□ -1.01
HMGB3-201ENST00000325307 ALKBH1Q13686 389 aaKnown RBP8.77□□□□□ -1.01
HMGB3-201ENST00000325307 NRN1LQ496H8 165 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 DEGS2Q6QHC5 323 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 FGFBP3Q8TAT2 258 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 SLC7A6Q92536 515 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 SMIM19Q96E16 107 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 MED18Q9BUE0 208 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 A0A0G2JNJ9 132 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 HSPB2A8KAH6 182 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 GABRPO00591 440 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 SLC2A1P11166 492 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 OPRM1P35372 400 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 HTR5AP47898 357 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 RORCP51449 518 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 UBE2NP61088 152 aaKnown RBP8.77□□□□□ -1.01
HMGB3-201ENST00000325307 GRB2P62993 217 aaKnown RBP8.77□□□□□ -1.01
HMGB3-201ENST00000325307 MFGE8Q08431 387 aaPredicted RBP8.77□□□□□ -1.01
HMGB3-201ENST00000325307 HSPB2Q16082 182 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 DMKNQ6E0U4 476 aaPredicted RBP8.77□□□□□ -1.01
HMGB3-201ENST00000325307 BEND4Q6ZU67 534 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 OR2G2Q8NGZ5 317 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 OR5AK2Q8NH90 309 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 ENKURQ8TC29 256 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 NANOS1Q8WY41 292 aaKnown RBP8.77□□□□□ -1.01
HMGB3-201ENST00000325307 WDFY2Q96P53 400 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 OR2H1Q9GZK4 316 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 COMMD4Q9H0A8 199 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 NARFLQ9H6Q4 476 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 Q9UFV3 132 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 R4GMQ9 66 aa8.77□□□□□ -1.01
HMGB3-201ENST00000325307 NCOA6Q14686 2063 aaPredicted RBP8.76□□□□□ -1.01
HMGB3-201ENST00000325307 TRDV1A0A1B0GX56 115 aa8.76□□□□□ -1.01
HMGB3-201ENST00000325307 OGG1O15527 345 aa8.76□□□□□ -1.01
HMGB3-201ENST00000325307 PLPP2O43688 288 aa8.76□□□□□ -1.01
HMGB3-201ENST00000325307 CNOT4O95628 575 aaKnown RBP8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms