RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 POFUT1Q9H488 388 aa15.69■□□□□ 0.1
HMGA1-201ENST00000311487 DDX28Q9NUL7 540 aaKnown RBP15.69■□□□□ 0.1
HMGA1-201ENST00000311487 PLCE1Q9P212 2302 aa15.69■□□□□ 0.1
HMGA1-201ENST00000311487 PNMA8CA0A1B0GUJ8 204 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 E9PI62 339 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 ABHD16AO95870 558 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 KRT8P05787 483 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 ACSM4P0C7M7 580 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 PTAFRP25105 342 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 ZNF121P58317 390 aaPredicted RBP15.68■□□□□ 0.1
HMGA1-201ENST00000311487 ACTC1P68032 377 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 ACTA1P68133 377 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 LIPNQ5VXI9 398 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 ZNF787Q6DD87 383 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 FAM57BQ71RH2 274 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 ACBD4Q8NC06 268 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 SPRYD4Q8WW59 207 aaPredicted RBP15.68■□□□□ 0.1
HMGA1-201ENST00000311487 ASB17Q8WXJ9 295 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 KCNJ15Q99712 375 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 COQ7Q99807 217 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 SPOCK3Q9BQ16 436 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 NDUFB11Q9NX14 153 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 ZNF319Q9P2F9 582 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 FBN2P35556 2912 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 METTL15A6NJ78 407 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 A6NNC1 897 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 LCATP04180 440 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 CD3EP07766 207 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 LOXP28300 417 aaPredicted RBP15.68■□□□□ 0.1
HMGA1-201ENST00000311487 BEX5Q5H9J7 111 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 ZNF684Q5T5D7 378 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 RFPL4BQ6ZWI9 263 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 ZFP41Q8N8Y5 198 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 OR2AE1Q8NHA4 323 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 SPTSSAQ969W0 71 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 ATP23Q9Y6H3 246 aa15.68■□□□□ 0.1
HMGA1-201ENST00000311487 TMEM269A0A1B0GVZ9 245 aa15.67■□□□□ 0.1
HMGA1-201ENST00000311487 SHISA9B4DS77 424 aa15.67■□□□□ 0.1
HMGA1-201ENST00000311487 CLDN25C9JDP6 229 aa15.67■□□□□ 0.1
HMGA1-201ENST00000311487 TBX1O43435 398 aa15.67■□□□□ 0.1
HMGA1-201ENST00000311487 RIDAP52758 137 aaKnown RBP15.67■□□□□ 0.1
HMGA1-201ENST00000311487 ROM1Q03395 351 aa15.67■□□□□ 0.1
HMGA1-201ENST00000311487 EGR3Q06889 387 aa15.67■□□□□ 0.1
HMGA1-201ENST00000311487 SNTB2Q13425 540 aaKnown RBP15.67■□□□□ 0.1
HMGA1-201ENST00000311487 HLXQ14774 488 aaPredicted RBP15.67■□□□□ 0.1
HMGA1-201ENST00000311487 ZNF846Q147U1 533 aa15.67■□□□□ 0.1
HMGA1-201ENST00000311487 PHC2Q8IXK0 858 aa15.67■□□□□ 0.1
HMGA1-201ENST00000311487 FAM169BQ8N8A8 192 aa15.67■□□□□ 0.1
HMGA1-201ENST00000311487 MCFD2Q8NI22 146 aa15.67■□□□□ 0.1
HMGA1-201ENST00000311487 WACQ9BTA9 647 aa15.67■□□□□ 0.1
HMGA1-201ENST00000311487 CCDC59Q9P031 241 aaKnown RBP15.67■□□□□ 0.1
HMGA1-201ENST00000311487 STARD10Q9Y365 291 aa15.67■□□□□ 0.1
HMGA1-201ENST00000311487 CPEP16870 476 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 CRYBB2P43320 205 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 UCP2P55851 309 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 TPTEP56180 551 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 GRB2P62993 217 aaKnown RBP15.66■□□□□ 0.1
HMGA1-201ENST00000311487 ZNF404Q494X3 552 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 CDONQ4KMG0 1287 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 LIPKQ5VXJ0 399 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 KLBQ86Z14 1044 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 MFSD4AQ8N468 514 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 ZNF485Q8NCK3 441 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 LILRB1Q8NHL6 650 aaPredicted RBP15.66■□□□□ 0.1
HMGA1-201ENST00000311487 PELI1Q96FA3 418 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 MNTQ99583 582 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 HMG20AQ9NP66 347 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 PALMDQ9NP74 551 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 ISYNA1Q9NPH2 558 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 SLC22A13Q9Y226 551 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 PHYHO14832 338 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 LALBAP00709 142 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 ECH1Q13011 328 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 MSMPQ1L6U9 139 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 KRTAP27-1Q3LI81 207 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 OR1J1Q8NGS3 322 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 S100ZQ8WXG8 99 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 RNF166Q96A37 237 aaPredicted RBP15.66■□□□□ 0.1
HMGA1-201ENST00000311487 TRMT61AQ96FX7 289 aaKnown RBP15.66■□□□□ 0.1
HMGA1-201ENST00000311487 SOX7Q9BT81 388 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 JAM3Q9BX67 310 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 WDR12Q9GZL7 423 aaKnown RBP15.66■□□□□ 0.1
HMGA1-201ENST00000311487 NXF2Q9GZY0 626 aaKnown RBP15.66■□□□□ 0.1
HMGA1-201ENST00000311487 EIF3KQ9UBQ5 218 aaKnown RBP15.66■□□□□ 0.1
HMGA1-201ENST00000311487 STUB1Q9UNE7 303 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 RNF115Q9Y4L5 304 aa15.66■□□□□ 0.1
HMGA1-201ENST00000311487 SMPD2O60906 423 aa15.65■□□□□ 0.1
HMGA1-201ENST00000311487 COX5BP10606 129 aa15.65■□□□□ 0.1
HMGA1-201ENST00000311487 BMP4P12644 408 aa15.65■□□□□ 0.1
HMGA1-201ENST00000311487 PSMA1P25786 263 aaKnown RBP15.65■□□□□ 0.1
HMGA1-201ENST00000311487 FABP6P51161 128 aa15.65■□□□□ 0.1
HMGA1-201ENST00000311487 NANOS3P60323 173 aaKnown RBP15.65■□□□□ 0.1
HMGA1-201ENST00000311487 GDPGP1Q6ZNW5 385 aa15.65■□□□□ 0.1
HMGA1-201ENST00000311487 FAM220AQ7Z4H9 259 aa15.65■□□□□ 0.1
HMGA1-201ENST00000311487 RDH10Q8IZV5 341 aa15.65■□□□□ 0.1
HMGA1-201ENST00000311487 ZNF295-AS1Q8N0V1 137 aa15.65■□□□□ 0.1
HMGA1-201ENST00000311487 OR1J2Q8NGS2 313 aa15.65■□□□□ 0.1
HMGA1-201ENST00000311487 OR2J1Q9GZK6 312 aa15.65■□□□□ 0.1
HMGA1-201ENST00000311487 MMP27Q9H306 513 aa15.65■□□□□ 0.1
HMGA1-201ENST00000311487 EXOSC4Q9NPD3 245 aaKnown RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms