RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 CD1CP29017 333 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 TOMM34Q15785 309 aaPredicted RBP15.72■□□□□ 0.11
SYNPO-201ENST00000307662 FAM162BQ5T6X4 162 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 ZNF429Q86V71 674 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 OR10D4PQ8NGN7 298 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 MBNL1Q9NR56 388 aaKnown RBP15.72■□□□□ 0.11
SYNPO-201ENST00000307662 C4orf47A7E2U8 309 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 BATF2Q8N1L9 274 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 ARSGQ96EG1 525 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 J3QR89 54 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 DSCR3O14972 297 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 CST4P01036 141 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 IGHEP01854 428 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 KCNJ3P48549 501 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 TPPP2P59282 170 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 TINAGL1Q9GZM7 467 aaPredicted RBP15.72■□□□□ 0.11
SYNPO-201ENST00000307662 TXNIPQ9H3M7 391 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 ZDHHC11Q9H8X9 412 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 PPP1R3CQ9UQK1 317 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 ARL2-SNX15V9GYD0 113 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 LEUTXA8MZ59 168 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 GSK3AP49840 483 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 MIDNQ504T8 468 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 ZDHHC22Q8N966 263 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 SLC39A7Q92504 469 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 CXorf58Q96LI9 332 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 CLCF1Q9UBD9 225 aa15.72■□□□□ 0.11
SYNPO-201ENST00000307662 SLX4Q8IY92 1834 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 CD46P15529 392 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 TCN2P20062 427 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 EDDM3BP56851 147 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 CLEC12BQ2HXU8 276 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 ARHGEF39Q8N4T4 335 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 ARRDC1Q8N5I2 433 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 DUSP18Q8NEJ0 188 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 FGF21Q9NSA1 209 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 IL20Q9NYY1 176 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 PSENENQ9NZ42 101 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 COL18A1P39060 1754 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 MYO5AQ9Y4I1 1855 aaKnown RBP15.71■□□□□ 0.11
SYNPO-201ENST00000307662 SEC14L6B5MCN3 397 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 PNPP00491 289 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 IAPPP10997 89 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 EMDP50402 254 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 MPPED2Q15777 294 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 MSRB3Q8IXL7 192 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 CMBLQ96DG6 245 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 MUCL1Q96DR8 90 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 RAB35Q15286 201 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 CORO2AQ92828 525 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 OR6C1Q96RD1 312 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 MAGT1Q9H0U3 335 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 SLC17A5Q9NRA2 495 aa15.71■□□□□ 0.11
SYNPO-201ENST00000307662 HSD17B13Q7Z5P4 300 aaPredicted RBP15.71■□□□□ 0.1
SYNPO-201ENST00000307662 C19orf43Q9BQ61 176 aa15.71■□□□□ 0.1
SYNPO-201ENST00000307662 DYNLRB1Q9NP97 96 aa15.71■□□□□ 0.1
SYNPO-201ENST00000307662 LIN7CQ9NUP9 197 aaKnown RBP15.71■□□□□ 0.1
SYNPO-201ENST00000307662 CCDC187A0A096LP49 1063 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 CHEK1O14757 476 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 PAX6P26367 422 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 IL10RAQ13651 578 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 PYCR3Q53H96 274 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 NKAIN2Q5VXU1 208 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 LYSMD4Q5XG99 296 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 LAIR1Q6GTX8 287 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 PHYHIPLQ96FC7 376 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 MYH14Q7Z406 1995 aaKnown RBP15.7■□□□□ 0.1
SYNPO-201ENST00000307662 PLPP2O43688 288 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 RRASP10301 218 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 TAS2R45P59539 299 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 MUC20Q8N307 709 aaPredicted RBP15.7■□□□□ 0.1
SYNPO-201ENST00000307662 UBAC2Q8NBM4 344 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 OR4S1Q8NGB4 309 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 SCMH1Q96GD3 660 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 RTL8AQ9BWD3 113 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 ZNF891A8MT65 544 aaPredicted RBP15.7■□□□□ 0.1
SYNPO-201ENST00000307662 M0R135 149 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 IQCJQ1A5X6 159 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 ZNF628Q5EBL2 1059 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 PLAC9Q5JTB6 97 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 GPR32P1Q8NGA4 272 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 RHBDD1Q8TEB9 315 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 ZNF799Q96GE5 643 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 PRRC2BQ5JSZ5 2229 aaKnown RBP15.7■□□□□ 0.1
SYNPO-201ENST00000307662 ALOX12BO75342 701 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 VAMP5O95183 116 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 PPICP45877 212 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 KRTDAPP60985 99 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 EDDM3AQ14507 147 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 BHLHE23Q8NDY6 225 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 OR4D10Q8NGI6 311 aa15.7■□□□□ 0.1
SYNPO-201ENST00000307662 ING1Q9UK53 422 aaPredicted RBP15.7■□□□□ 0.1
SYNPO-201ENST00000307662 A0A1B0GX78 115 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 FAM221AA4D161 298 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 TBC1D28Q2M2D7 210 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 FAM219BQ5XKK7 198 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 SLC35E1Q96K37 410 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 NUDT9Q9BW91 350 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 CTDSP1Q9GZU7 261 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 UCK1Q9HA47 277 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms