RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CCR2P41597 374 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 LRRC10Q5BKY1 277 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 NOXO1Q8NFA2 376 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 OR2G3Q8NGZ4 309 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 MYOZ1Q9NP98 299 aaPredicted RBP17.32■□□□□ 0.36
UPF1-201ENST00000262803 GUSBP08236 651 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 SLC17A1Q14916 467 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 BAGE3Q86Y29 109 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 BAGE2Q86Y30 109 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 ZDHHC16Q969W1 377 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 SLC6A13Q9NSD5 602 aa17.32■□□□□ 0.36
UPF1-201ENST00000262803 ASPDHA6ND91 283 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 CCSO14618 274 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 TBX19O60806 448 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 OR2J2O76002 312 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 FAM122BQ7Z309 247 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 ABI3BPQ7Z7G0 1075 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 FBXL6Q8N531 539 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 OR10R2Q8NGX6 335 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 SCN9AQ15858 1988 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 OR10A3P58181 314 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 PBOV1Q9GZY1 135 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 TAF9BQ9HBM6 251 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 OCIAD1Q9NX40 245 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 WSB2Q9NYS7 404 aaPredicted RBP17.31■□□□□ 0.36
UPF1-201ENST00000262803 FBXL4Q9UKA2 621 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 BTG2P78543 158 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 CDC20Q12834 499 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 FXNQ16595 210 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 TSLPQ969D9 159 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 MARC2Q969Z3 335 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 SMIM19Q96E16 107 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 PLAC1Q9HBJ0 212 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 FLVCR1Q9Y5Y0 555 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 RP1L1Q8IWN7 2480 aaPredicted RBP17.31■□□□□ 0.36
UPF1-201ENST00000262803 TRGV10A0A0A0MS01 117 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 DVL1O14640 695 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 DVL1P1P54792 670 aaPredicted RBP17.31■□□□□ 0.36
UPF1-201ENST00000262803 HLA-BQ31612 363 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 CMTM3Q96MX0 182 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 FGF20Q9NP95 211 aaPredicted RBP17.31■□□□□ 0.36
UPF1-201ENST00000262803 GPR84Q9NQS5 396 aa17.31■□□□□ 0.36
UPF1-201ENST00000262803 RHOUQ7L0Q8 258 aa17.3■□□□□ 0.36
UPF1-201ENST00000262803 BHLHE23Q8NDY6 225 aa17.3■□□□□ 0.36
UPF1-201ENST00000262803 CTSFQ9UBX1 484 aa17.3■□□□□ 0.36
UPF1-201ENST00000262803 CDK5R1Q15078 307 aa17.3■□□□□ 0.36
UPF1-201ENST00000262803 PELI1Q96FA3 418 aa17.3■□□□□ 0.36
UPF1-201ENST00000262803 ZNF2Q9BSG1 426 aaPredicted RBP17.3■□□□□ 0.36
UPF1-201ENST00000262803 FOXQ1Q9C009 403 aa17.3■□□□□ 0.36
UPF1-201ENST00000262803 FOXJ3Q9UPW0 622 aa17.3■□□□□ 0.36
UPF1-201ENST00000262803 TNRC6CQ9HCJ0 1690 aaKnown RBP17.3■□□□□ 0.36
UPF1-201ENST00000262803 RPS16P62249 146 aaKnown RBP17.3■□□□□ 0.36
UPF1-201ENST00000262803 TMEM217Q8N7C4 229 aa17.3■□□□□ 0.36
UPF1-201ENST00000262803 OR5M1Q8NGP8 315 aa17.3■□□□□ 0.36
UPF1-201ENST00000262803 LOXHD1Q8IVV2 1947 aa17.3■□□□□ 0.36
UPF1-201ENST00000262803 TOX3O15405 576 aaPredicted RBP17.3■□□□□ 0.36
UPF1-201ENST00000262803 EFSO43281 561 aa17.3■□□□□ 0.36
UPF1-201ENST00000262803 THNSL2Q86YJ6 484 aa17.3■□□□□ 0.36
UPF1-201ENST00000262803 CHST6Q9GZX3 395 aa17.3■□□□□ 0.36
UPF1-201ENST00000262803 TMEFF2Q9UIK5 374 aaPredicted RBP17.3■□□□□ 0.36
UPF1-201ENST00000262803 SCN7AQ01118 1682 aa17.3■□□□□ 0.36
UPF1-201ENST00000262803 E5RGE8 158 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 NDUFB3O43676 98 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 H2AFB1P0C5Y9 115 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 RPS27P42677 84 aaKnown RBP17.29■□□□□ 0.36
UPF1-201ENST00000262803 ZNF468Q5VIY5 522 aaPredicted RBP17.29■□□□□ 0.36
UPF1-201ENST00000262803 NSG2Q9Y328 171 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 TRGV5A0A0B4J1U4 118 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 SERPINE3A8MV23 424 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 SIRPB1O00241 398 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 SCGB1D1O95968 90 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 CCL7P80098 99 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 BATFQ16520 125 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 CTF1Q16619 201 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 VMA21Q3ZAQ7 101 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 OR8G2PQ6IF36 304 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 SLC36A1Q7Z2H8 476 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 OR51H1Q8NH63 302 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 KCNRGQ8N5I3 272 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 DTWD2Q8NBA8 298 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 SPSB1Q96BD6 273 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 IFITM5A6NNB3 132 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 ICMTO60725 284 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 PIAS2O75928 621 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 MT-CO3P00414 261 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 GABRB1P18505 474 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 TAF9Q16594 264 aa17.29■□□□□ 0.36
UPF1-201ENST00000262803 RAB35Q15286 201 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 ANKRD53Q8N9V6 530 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 ZNF485Q8NCK3 441 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 COL18A1P39060 1754 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 FOSL1P15407 271 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 ATF1P18846 271 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 LRRC61Q9BV99 259 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 A0A0B4J203 849 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 A0A1W2PNR3 127 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 INSM1Q01101 510 aaPredicted RBP17.28■□□□□ 0.36
UPF1-201ENST00000262803 ADIRFQ15847 76 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 PHYHD1Q5SRE7 291 aa17.28■□□□□ 0.36
UPF1-201ENST00000262803 ASTLQ6HA08 431 aaPredicted RBP17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms