RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 DUX4L7P0CJ90 424 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 MPGP29372 298 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 LINC01590Q5TEZ4 76 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 TRILQ7L0X0 811 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 FRRS1LQ9P0K9 344 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 DUX4Q9UBX2 424 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 MRPS18CQ9Y3D5 142 aaKnown RBP10.25□□□□□ -0.77
VPS4A-201ENST00000254950 PLXND1Q9Y4D7 1925 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 ZNF850A8MQ14 1090 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 OR7C1O76099 320 aaPredicted RBP10.25□□□□□ -0.77
VPS4A-201ENST00000254950 NRASP01111 189 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 CHRM2P08172 466 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 PTGER4P35408 488 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 THBS4P35443 961 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 STEAP3Q658P3 488 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 SLC25A47Q6Q0C1 308 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 LYPD8Q6UX82 237 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 ELMOD2Q8IZ81 293 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 SLC7A6Q92536 515 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 RAB3CQ96E17 227 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 RNF170Q96K19 258 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 SPACA5Q96QH8 159 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 SLC17A2O00624 439 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 NOS1APO75052 506 aaPredicted RBP10.25□□□□□ -0.77
VPS4A-201ENST00000254950 FAHP16930 419 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 EVX1P49640 407 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 MMP16P51512 607 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 RPS23P62266 143 aaKnown RBP10.25□□□□□ -0.77
VPS4A-201ENST00000254950 PMPCAQ10713 525 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 PCK2Q16822 640 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 NKPD1Q17RQ9 610 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 SLC25A35Q3KQZ1 300 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 PPP1R35Q8TAP8 253 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 PPP1R14BQ96C90 147 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 SRXN1Q9BYN0 137 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 RNF32Q9H0A6 362 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 OPA3Q9H6K4 179 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 ZNF552Q9H707 407 aaPredicted RBP10.25□□□□□ -0.77
VPS4A-201ENST00000254950 KLHDC2Q9Y2U9 406 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 BDP1A6H8Y1 2624 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 MEIS3P1A6NDR6 274 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 LYZL6O75951 148 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 AKAIN1P0CW23 69 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 ZNF44P15621 663 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 SELEP16581 610 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 STOMP27105 288 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 BLVRBP30043 206 aaPredicted RBP10.24□□□□□ -0.77
VPS4A-201ENST00000254950 FAM27BQ5VT28 67 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 ASCL5Q7RTU5 278 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 LRRC75AQ8NAA5 344 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 ZNF69Q9UC07 566 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 RBMX2Q9Y388 322 aaKnown RBP10.24□□□□□ -0.77
VPS4A-201ENST00000254950 KIF26BQ2KJY2 2108 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 APC2O95996 2303 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 TEX13DA0A0J9YY54 714 aaPredicted RBP10.24□□□□□ -0.77
VPS4A-201ENST00000254950 TMEM200CA6NKL6 621 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 B4DXG7 233 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 NEURL1O76050 574 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 ACSM4P0C7M7 580 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 RAB14P61106 215 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 Q0VFX4 171 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 RIPPLY2Q5TAB7 128 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 FBXW9Q5XUX1 488 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 BEND4Q6ZU67 534 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 ACKR4Q9NPB9 350 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 PTTG3PQ9NZH4 202 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 DNAJB11Q9UBS4 358 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 A0A0G2JMP0 313 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 A0A0X1KG70 313 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 ZNF816-ZNF321PA0A0X1KG74 233 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 CYTIPO60759 359 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 HPNP05981 417 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 FAM157BP0CG42 384 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 BMP5P22003 454 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 GDNFP39905 211 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 MAGEB1P43366 347 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 SMCO1Q147U7 214 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 KRTCAP3Q53RY4 240 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 DCDC5Q6ZRR9 648 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 CD163Q86VB7 1156 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 OR4M2Q8NGB6 313 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 CREB3L1Q96BA8 519 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 ZC3HAV1LQ96H79 300 aaKnown RBP10.24□□□□□ -0.77
VPS4A-201ENST00000254950 DYNLRB1Q9NP97 96 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 SLC7A10Q9NS82 523 aa10.24□□□□□ -0.77
VPS4A-201ENST00000254950 A0A0B4J203 849 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 AHRRA9YTQ3 701 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 CELA3AP09093 270 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 ATF1P18846 271 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 DDOSTP39656 456 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 PTH2RP49190 550 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 TAS2R19P59542 299 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 POU4F3Q15319 338 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 HYAL4Q2M3T9 481 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 TEX30Q5JUR7 227 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 SPIN3Q5JUX0 258 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 CLVS2Q5SYC1 327 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 C20orf196Q8IYI0 205 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 RFLNBQ8N5W9 214 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 MOV10Q9HCE1 1003 aaKnown RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms