RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 RCAN2Q14206 197 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 CLINT1Q14677 625 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 NCF4Q15080 339 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 DGUOKQ16854 277 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 CCNJQ5T5M9 372 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 C6orf183Q5T699 404 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 PTRHD1Q6GMV3 140 aaKnown RBP1.61□□□□□ -2.15
CD44-239ENST00000639002 TRIM40Q6P9F5 258 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 TMEM220Q6QAJ8 160 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 SLC16A14Q7RTX9 510 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 DHDDSQ86SQ9 333 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 PLCZ1Q86YW0 608 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 KRT222Q8N1A0 295 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 JAGN1Q8N5M9 183 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 INO80EQ8NBZ0 244 aaPredicted RBP1.61□□□□□ -2.15
CD44-239ENST00000639002 FBXO36Q8NEA4 188 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 OR2L3Q8NG85 312 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 OR51L1Q8NGJ5 315 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 OR9G4Q8NGQ1 327 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 OR1L6Q8NGR2 347 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 ACMSDQ8TDX5 336 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 CA5BP1Q8WTZ4 195 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 FAM131CQ96AQ9 280 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 C8orf44Q96CB5 159 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 LRRC45Q96CN5 670 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 CCDC126Q96EE4 140 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 PDXPQ96GD0 296 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 SMIM10Q96HG1 83 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 RARRES2Q99969 163 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 TMEM59Q9BXS4 323 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 DRC3Q9H069 523 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 OR52A5Q9H2C5 316 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 ANKRD19PQ9H560 264 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 LY9Q9HBG7 655 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 LYRM4Q9HD34 91 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 FAM49BQ9NUQ9 324 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 CLN8Q9UBY8 286 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 SHPKQ9UHJ6 478 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 DDX19BQ9UMR2 479 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 RHBDD3Q9Y3P4 386 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 ATP6V1DQ9Y5K8 247 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 ATP10AO60312 1499 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 TEP1Q99973 2627 aaKnown RBP1.61□□□□□ -2.15
CD44-239ENST00000639002 BRD4O60885 1362 aaPredicted RBP1.6□□□□□ -2.15
CD44-239ENST00000639002 INSRP06213 1382 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 NEURL4Q96JN8 1562 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 TRAV6A0A075B6T7 132 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 IQCF5A8MTL0 148 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 H0YHG0 523 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 H7C0C1 242 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 SIRPB1O00241 398 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 KMOO15229 486 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 ZNF207O43670 478 aaKnown RBP1.6□□□□□ -2.15
CD44-239ENST00000639002 KDELR3O43731 214 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 CALUO43852 315 aaPredicted RBP1.6□□□□□ -2.15
CD44-239ENST00000639002 CBR3O75828 277 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 CCNB2O95067 398 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 KLHL2O95198 593 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 SLC25A14O95258 325 aaPredicted RBP1.6□□□□□ -2.15
CD44-239ENST00000639002 FARS2O95363 451 aaKnown RBP1.6□□□□□ -2.15
CD44-239ENST00000639002 ANXA5P08758 320 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 OCMP0CE72 109 aaPredicted RBP1.6□□□□□ -2.15
CD44-239ENST00000639002 CCL2P13500 99 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 TUBG1P23258 451 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 CD82P27701 267 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 FOXN2P32314 431 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 NAA10P41227 235 aaPredicted RBP1.6□□□□□ -2.15
CD44-239ENST00000639002 SLC1A2P43004 574 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 YAP1P46937 504 aaKnown RBP1.6□□□□□ -2.15
CD44-239ENST00000639002 CCR8P51685 355 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 CLDN18P56856 261 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 SKP1P63208 163 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 UBE2IP63279 158 aaKnown RBP1.6□□□□□ -2.15
CD44-239ENST00000639002 TWF1Q12792 350 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 SLC39A6Q13433 755 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 DGCR6Q14129 220 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 GK3PQ14409 553 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 GINS1Q14691 196 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 STUMQ69YW2 141 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 CLEC6AQ6EIG7 209 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 C22orf42Q6IC83 251 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 C8orf74Q6P047 294 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 STRADAQ7RTN6 431 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 MRPL21Q7Z2W9 205 aaKnown RBP1.6□□□□□ -2.15
CD44-239ENST00000639002 PRSS58Q8IYP2 241 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 LIX1Q8N485 282 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 C17orf78Q8N4C9 275 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 ZADH2Q8N4Q0 377 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 SNX31Q8N9S9 440 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 TTC29Q8NA56 475 aaPredicted RBP1.6□□□□□ -2.15
CD44-239ENST00000639002 SDR9C7Q8NEX9 313 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 B3GNT7Q8NFL0 401 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 OR4F6Q8NGB9 312 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 CXorf40AQ8TE69 158 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 NRGNQ92686 78 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 FGF14Q92915 247 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 RBMXL1Q96E39 390 aaKnown RBP1.6□□□□□ -2.15
CD44-239ENST00000639002 C9orf72Q96LT7 481 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 OPALINQ96PE5 141 aa1.6□□□□□ -2.15
CD44-239ENST00000639002 TSSK3Q96PN8 268 aa1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms