RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 LOC100509620A0A075B734 347 aa17.52■□□□□ 0.39
CLN3-250ENST00000636839 A0A1B0GTI1 187 aa17.52■□□□□ 0.39
CLN3-250ENST00000636839 SRMP19623 302 aa17.52■□□□□ 0.39
CLN3-250ENST00000636839 MTNR1BP49286 362 aa17.52■□□□□ 0.39
CLN3-250ENST00000636839 CEP78Q5JTW2 689 aa17.52■□□□□ 0.39
CLN3-250ENST00000636839 ZNF584Q8IVC4 421 aa17.52■□□□□ 0.39
CLN3-250ENST00000636839 ZNF433Q8N7K0 673 aaPredicted RBP17.52■□□□□ 0.39
CLN3-250ENST00000636839 MS4A3Q96HJ5 214 aa17.52■□□□□ 0.39
CLN3-250ENST00000636839 GFI1Q99684 422 aa17.52■□□□□ 0.39
CLN3-250ENST00000636839 AK6Q9Y3D8 172 aaKnown RBP17.52■□□□□ 0.39
CLN3-250ENST00000636839 TRBV5-7A0A0A0MS05 114 aa17.51■□□□□ 0.39
CLN3-250ENST00000636839 CTDSP2O14595 271 aa17.51■□□□□ 0.39
CLN3-250ENST00000636839 ISG15P05161 165 aa17.51■□□□□ 0.39
CLN3-250ENST00000636839 PRSS12P56730 875 aa17.51■□□□□ 0.39
CLN3-250ENST00000636839 SLC25A35Q3KQZ1 300 aa17.51■□□□□ 0.39
CLN3-250ENST00000636839 KRTAP27-1Q3LI81 207 aa17.51■□□□□ 0.39
CLN3-250ENST00000636839 ZNF544Q6NX49 715 aa17.51■□□□□ 0.39
CLN3-250ENST00000636839 CXorf67Q86X51 503 aaPredicted RBP17.51■□□□□ 0.39
CLN3-250ENST00000636839 LYZL4Q96KX0 146 aa17.51■□□□□ 0.39
CLN3-250ENST00000636839 NXF2Q9GZY0 626 aaKnown RBP17.51■□□□□ 0.39
CLN3-250ENST00000636839 A0A0G2JK05 382 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 A0A0G2JNJ9 132 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 CIB4A0PJX0 185 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 GABRA6Q16445 453 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 ZNF474Q6S9Z5 364 aaPredicted RBP17.5■□□□□ 0.39
CLN3-250ENST00000636839 LUZP2Q86TE4 346 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 SPTSSAQ969W0 71 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 PGAM5Q96HS1 289 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 GPR84Q9NQS5 396 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 B3GNT2Q9NY97 397 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 Q9UFV3 132 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 HHLA2Q9UM44 414 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 KALRNO60229 2985 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 TBX1O43435 398 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 EDN3P14138 238 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 CCNOP22674 350 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 MYL9P24844 172 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 SOX6P35712 828 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 SH3BGRP55822 239 aaPredicted RBP17.5■□□□□ 0.39
CLN3-250ENST00000636839 PAMR1Q6UXH9 720 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 ZNF704Q6ZNC4 412 aaPredicted RBP17.5■□□□□ 0.39
CLN3-250ENST00000636839 MDP1Q86V88 176 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 OR6Q1Q8NGQ2 317 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 OR13C3Q8NGS6 347 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 NKX3-1Q99801 234 aaPredicted RBP17.5■□□□□ 0.39
CLN3-250ENST00000636839 DHDHQ9UQ10 334 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 PRR14LQ5THK1 2151 aa17.5■□□□□ 0.39
CLN3-250ENST00000636839 ARL6IP5O75915 188 aa17.49■□□□□ 0.39
CLN3-250ENST00000636839 UBCP0CG48 685 aaKnown RBP17.49■□□□□ 0.39
CLN3-250ENST00000636839 SLC2A2P11168 524 aaPredicted RBP17.49■□□□□ 0.39
CLN3-250ENST00000636839 ADRA2CP18825 462 aa17.49■□□□□ 0.39
CLN3-250ENST00000636839 BMP5P22003 454 aa17.49■□□□□ 0.39
CLN3-250ENST00000636839 MYPOPQ86VE0 399 aaPredicted RBP17.49■□□□□ 0.39
CLN3-250ENST00000636839 COMMD2Q86X83 199 aa17.49■□□□□ 0.39
CLN3-250ENST00000636839 DNAAF1Q8NEP3 725 aa17.49■□□□□ 0.39
CLN3-250ENST00000636839 OR2AE1Q8NHA4 323 aa17.49■□□□□ 0.39
CLN3-250ENST00000636839 FAM71F1Q96KD3 344 aaPredicted RBP17.49■□□□□ 0.39
CLN3-250ENST00000636839 C1QTNF6Q9BXI9 259 aa17.49■□□□□ 0.39
CLN3-250ENST00000636839 TRAV1-2A0A0B4J238 106 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 SYT7O43581 403 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 CELA3BP08861 270 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 HOXD4P09016 255 aaPredicted RBP17.48■□□□□ 0.39
CLN3-250ENST00000636839 COX5AP20674 150 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 ACHEP22303 614 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 ECH1Q13011 328 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 TMEM244Q5VVB8 128 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 FGGYQ96C11 551 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 COL6A6A6NMZ7 2263 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 SHANK1Q9Y566 2161 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 NBASA2RRP1 2371 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 A0A0B4J203 849 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 CNOT4O95628 575 aaKnown RBP17.48■□□□□ 0.39
CLN3-250ENST00000636839 LCATP04180 440 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 MAS1P04201 325 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 CRHP06850 196 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 TPTEP56180 551 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 TGFBR3Q03167 851 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 GSG1Q2KHT4 349 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 STAC2Q6ZMT1 411 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 LIX1LQ8IVB5 337 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 PAQR4Q8N4S7 273 aaPredicted RBP17.48■□□□□ 0.39
CLN3-250ENST00000636839 SGK3Q96BR1 496 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 ADAT3Q96EY9 351 aaPredicted RBP17.48■□□□□ 0.39
CLN3-250ENST00000636839 ZNF75AQ96N20 296 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 TAS2R4Q9NYW5 299 aa17.48■□□□□ 0.39
CLN3-250ENST00000636839 C5orf49A4QMS7 147 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 AGFG2O95081 481 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 RAB3BP20337 219 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 STOMP27105 288 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 DMRTC1Q5HYR2 192 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 IDNKQ5T6J7 187 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 LRRTM1Q86UE6 522 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 OR1J2Q8NGS2 313 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 MMP27Q9H306 513 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 MOB1AQ9H8S9 216 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 ERVH48-1M5A8F1 160 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 INHBBP09529 407 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 ARR3P36575 388 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 DRAM2Q6UX65 266 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 WDR31Q8NA23 367 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms