RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 MITD1Q8WV92 249 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 ST8SIA2Q92186 375 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 PMEPA1Q969W9 287 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 CMBLQ96DG6 245 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 EMC6Q9BV81 110 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 PTGES2Q9H7Z7 377 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 ASXL3Q9C0F0 2248 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 TRBV11-1A0A0K0K1C0 115 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 SHISA8B8ZZ34 492 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 D6RAR5 112 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 ERCC1P07992 297 aaPredicted RBP11.34□□□□□ -0.59
LINC00540-203ENST00000631321 MYBPHQ13203 477 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 NKPD1Q17RQ9 610 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 JMJD6Q6NYC1 403 aaPredicted RBP11.34□□□□□ -0.59
LINC00540-203ENST00000631321 SLC38A9Q8NBW4 561 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 NOXO1Q8NFA2 376 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 OR5L2Q8NGL0 311 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 NKD1Q969G9 470 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 FOXQ1Q9C009 403 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 CST11Q9H112 138 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 RASL12Q9NYN1 266 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 ANAPC10Q9UM13 185 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 PLEKHA6Q9Y2H5 1048 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 NOP16Q9Y3C1 178 aaKnown RBP11.34□□□□□ -0.59
LINC00540-203ENST00000631321 LHFPL6Q9Y693 200 aa11.34□□□□□ -0.59
LINC00540-203ENST00000631321 SPAG17Q6Q759 2223 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 USP34Q70CQ2 3546 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 C9orf170A2RU37 121 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 H3BML4 177 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 SPDEFO95238 335 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 PGA4P0DJD7 388 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 PGA3P0DJD8 388 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 CD96P40200 585 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 CASRP41180 1078 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 ZNF41P51814 821 aaPredicted RBP11.33□□□□□ -0.6
LINC00540-203ENST00000631321 AFF3P51826 1226 aaKnown RBP11.33□□□□□ -0.6
LINC00540-203ENST00000631321 PPP1R1AQ13522 171 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 C3orf33Q6P1S2 294 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 TMEM71Q6P5X7 295 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 TMEM81Q6P7N7 255 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 CFAP77Q6ZQR2 320 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 OR2W3Q7Z3T1 314 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 CD163Q86VB7 1156 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 GVQW1Q8N7I0 195 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 CHST4Q8NCG5 386 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 OR10R2Q8NGX6 335 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 PPP4R1LQ9P1A2 415 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 GLS2Q9UI32 602 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 MRPS17Q9Y2R5 130 aaKnown RBP11.33□□□□□ -0.6
LINC00540-203ENST00000631321 ADAMTS20P59510 1910 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 BCAT2O15382 392 aaPredicted RBP11.33□□□□□ -0.6
LINC00540-203ENST00000631321 SSX5O60225 188 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 STK17BO94768 372 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 ONECUT2O95948 504 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 IGHG1P01857 330 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 BCKDHBP21953 392 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 EIF1AXP47813 144 aaKnown RBP11.33□□□□□ -0.6
LINC00540-203ENST00000631321 FOXK1P85037 733 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 ACY1Q03154 408 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 ZNF239Q16600 458 aaKnown RBP11.33□□□□□ -0.6
LINC00540-203ENST00000631321 SLC25A47Q6Q0C1 308 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 ZNF574Q6ZN55 896 aaPredicted RBP11.33□□□□□ -0.6
LINC00540-203ENST00000631321 TMPRSS9Q7Z410 1059 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 UEVLDQ8IX04 471 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.33□□□□□ -0.6
LINC00540-203ENST00000631321 NUDCD2Q8WVJ2 157 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 SLC7A5P2Q9GIP4 190 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 DNTTIP1Q9H147 329 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 SDHAF3Q9NRP4 125 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 COQ3Q9NZJ6 369 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 KLRF1Q9NZS2 232 aa11.33□□□□□ -0.6
LINC00540-203ENST00000631321 EXPH5Q8NEV8 1989 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 A0A1B0GW55 424 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 ZNF878C9JN71 531 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 BCL2L11O43521 198 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 TRAF3IP2O43734 574 aaPredicted RBP11.32□□□□□ -0.6
LINC00540-203ENST00000631321 CSN2P05814 226 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 CHRM2P08172 466 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 DUX4L2P0CJ85 424 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 DUX4L3P0CJ86 424 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 DUX4L4P0CJ87 422 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 DUX4L5P0CJ88 424 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 DUX4L6P0CJ89 424 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 DUX4L7P0CJ90 424 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 NAT1P18440 290 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 KCNMB1Q16558 191 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 PXDC1Q5TGL8 231 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 TFAP2EQ6VUC0 442 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 OR5AS1Q8N127 324 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 PXT1Q8NFP0 134 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 OR13C9Q8NGT0 318 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 LHFPL5Q8TAF8 219 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 OR51E1Q8TCB6 317 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 PHYHIPLQ96FC7 376 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 WDR13Q9H1Z4 485 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 COMMD9Q9P000 198 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 DUX4Q9UBX2 424 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 KCNK7Q9Y2U2 307 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 WIF1Q9Y5W5 379 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms