RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 JSRP1Q96MG2 331 aaPredicted RBP9.2□□□□□ -0.94
VPS39-214ENST00000614932 TP53RKQ96S44 253 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 RNF2Q99496 336 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 PRSS16Q9NQE7 514 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 KNL1Q8NG31 2342 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 A0A087WWC5 75 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 TRBV6-7A0A0A0MS04 114 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 EDDM13A0A1B0GTR0 161 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 A0A1W2PP55 124 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 H7BY64 318 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 SCAF4O95104 1147 aaKnown RBP9.19□□□□□ -0.94
VPS39-214ENST00000614932 DCNP07585 359 aaKnown RBP9.19□□□□□ -0.94
VPS39-214ENST00000614932 PNLIPP16233 465 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 CHRNB4P30926 498 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 SOAT1P35610 550 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 TAS2R50P59544 299 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 ERVFRD-1P60508 538 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 PRSS53Q2L4Q9 553 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 C2orf27AQ580R0 203 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 MEX3BQ6ZN04 569 aaKnown RBP9.19□□□□□ -0.94
VPS39-214ENST00000614932 ERN2Q76MJ5 926 aaKnown RBP9.19□□□□□ -0.94
VPS39-214ENST00000614932 COMMD6Q7Z4G1 85 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 RBM45Q8IUH3 476 aaKnown RBP9.19□□□□□ -0.94
VPS39-214ENST00000614932 LYG1Q8N1E2 194 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 TMEM99Q8N816 258 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 ACOT4Q8N9L9 421 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 PLPP5Q8NEB5 264 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 PCGF1Q9BSM1 259 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 DPH1Q9BZG8 443 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 SLC35B3Q9H1N7 401 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 NELFAQ9H3P2 528 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 TAC3Q9UHF0 121 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 FBXO4Q9UKT5 387 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 EPOPA6NHQ4 379 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 SOCS6O14544 535 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 CH25HO95992 272 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 CHATP28329 748 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 CCR5P51681 352 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 FGF8P55075 233 aaPredicted RBP9.19□□□□□ -0.94
VPS39-214ENST00000614932 HBA1P69905 142 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 BATFQ16520 125 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 CLEC12AQ5QGZ9 265 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 PWWP2BQ6NUJ5 590 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 GPR32P1Q8NGA4 272 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 SAMD8Q96LT4 415 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 SCRT1Q9BWW7 348 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 PCBD2Q9H0N5 130 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 NCDNQ9UBB6 729 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 LRRK1Q38SD2 2015 aa9.19□□□□□ -0.94
VPS39-214ENST00000614932 CCDC85CA6NKD9 419 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 IFITM5A6NNB3 132 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 RNASET2O00584 256 aaKnown RBP9.18□□□□□ -0.94
VPS39-214ENST00000614932 GLSO94925 669 aaPredicted RBP9.18□□□□□ -0.94
VPS39-214ENST00000614932 GPANK1O95872 356 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 TNFSF10P50591 281 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 RPS26P62854 115 aaKnown RBP9.18□□□□□ -0.94
VPS39-214ENST00000614932 PIN1Q13526 163 aaPredicted RBP9.18□□□□□ -0.94
VPS39-214ENST00000614932 C4orf17Q53FE4 359 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 DMKNQ6E0U4 476 aaPredicted RBP9.18□□□□□ -0.94
VPS39-214ENST00000614932 REEP3Q6NUK4 255 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 ZNF100Q8IYN0 542 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 THRSPQ92748 146 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 RELTQ969Z4 430 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 SGCZQ96LD1 299 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 NRIP3Q9NQ35 241 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 KCNK6Q9Y257 313 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 URGCP-MRPS24S4R325 110 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 TRPM6Q9BX84 2022 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 GON4LQ3T8J9 2241 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 PEX12O00623 359 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 GEMIN2O14893 280 aaKnown RBP9.18□□□□□ -0.94
VPS39-214ENST00000614932 ZNF264O43296 627 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 KAT7O95251 611 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 PAPLNO95428 1278 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 IFNA6P05013 189 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 PGA4P0DJD7 388 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 PGA5P0DJD9 388 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 HSD3B2P26439 372 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 APOBEC3AP31941 199 aaPredicted RBP9.18□□□□□ -0.94
VPS39-214ENST00000614932 TFPI2P48307 235 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 PNLIPRP1P54315 467 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 UBE2KP61086 200 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 RPS15P62841 145 aaKnown RBP9.18□□□□□ -0.94
VPS39-214ENST00000614932 ZNF616Q08AN1 781 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 SHHQ15465 462 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 TMEM268Q5VZI3 342 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 HMGN2P46Q86SG4 172 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 ZSCAN4Q8NAM6 433 aaPredicted RBP9.18□□□□□ -0.94
VPS39-214ENST00000614932 ORAOV1Q8WV07 137 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 ZNF775Q96BV0 537 aaPredicted RBP9.18□□□□□ -0.94
VPS39-214ENST00000614932 PRAP1Q96NZ9 151 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 SLC25A21Q9BQT8 299 aaPredicted RBP9.18□□□□□ -0.94
VPS39-214ENST00000614932 FNDC11Q9BVV2 318 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 TAF9BQ9HBM6 251 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 USP36Q9P275 1121 aaKnown RBP9.18□□□□□ -0.94
VPS39-214ENST00000614932 APOBEC3BQ9UH17 382 aaKnown RBP9.18□□□□□ -0.94
VPS39-214ENST00000614932 PLXNA2O75051 1894 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 ELOA3DA6NLF2 546 aaPredicted RBP9.18□□□□□ -0.94
VPS39-214ENST00000614932 RAMP1O60894 148 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 HLA-AP01891 365 aaKnown RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms