RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 HNRNPA0Q13151 305 aaKnown RBP12.43□□□□□ -0.42
USP39-220ENST00000613444 GABRA6Q16445 453 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 HSD17B12Q53GQ0 312 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 TMEM244Q5VVB8 128 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 FAM57BQ71RH2 274 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 ZNF584Q8IVC4 421 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 MCFD2Q8NI22 146 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 SPTSSAQ969W0 71 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 TMEM106AQ96A25 262 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 SLC24A3Q9HC58 644 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 ATPIF1Q9UII2 106 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 HHLA2Q9UM44 414 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 SMG1Q96Q15 3661 aaKnown RBP12.43□□□□□ -0.42
USP39-220ENST00000613444 ARPC4-TTLL3A0A0A6YYG9 625 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 RAF1P04049 648 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 SRMP19623 302 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 MAPK3P27361 379 aaPredicted RBP12.42□□□□□ -0.42
USP39-220ENST00000613444 SOX6P35712 828 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 RAB1AP62820 205 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 DRAM2Q6UX65 266 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 TPRA1Q86W33 373 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 GFI1Q99684 422 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 SOX7Q9BT81 388 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 SFXN3Q9BWM7 321 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 MMP27Q9H306 513 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 CXorf56Q9H5V9 222 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 RNF121Q9H920 327 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 LOC100509620A0A075B734 347 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 ANKRD61A6NGH8 418 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 RAD51DO75771 328 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 APOC1P02654 83 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 ANXA2P07355 339 aaKnown RBP12.42□□□□□ -0.42
USP39-220ENST00000613444 INHBBP09529 407 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 CD79AP11912 226 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 CCL1P22362 96 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 MYL9P24844 172 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 ARR3P36575 388 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 OR10A3P58181 314 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 TGFBR3Q03167 851 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 PMPCAQ10713 525 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 TSC22D1Q15714 1073 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 DPPA2Q7Z7J5 298 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 OR6Q1Q8NGQ2 317 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 OR51E1Q8TCB6 317 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 KCNS3Q9BQ31 491 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 SLC30A2Q9BRI3 323 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 COL6A6A6NMZ7 2263 aa12.42□□□□□ -0.42
USP39-220ENST00000613444 MYO7BQ6PIF6 2116 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 NBASA2RRP1 2371 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 A0A075B6Q4 140 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 TRAV8-7A0A075B6U6 113 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 A0A0G2JNJ9 132 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 LMX1BO60663 402 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 UBL3O95164 117 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 COX5BP10606 129 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 PAX7P23759 505 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 SLC6A9P48067 706 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 BMXP51813 675 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 TPTEP56180 551 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 RBPJQ06330 500 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 SNAI3Q3KNW1 292 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 ZNF474Q6S9Z5 364 aaPredicted RBP12.41□□□□□ -0.42
USP39-220ENST00000613444 LINC00299Q6ZSB3 139 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 C1orf162Q8NEQ5 155 aaPredicted RBP12.41□□□□□ -0.42
USP39-220ENST00000613444 TSEN15Q8WW01 171 aaKnown RBP12.41□□□□□ -0.42
USP39-220ENST00000613444 LYZL4Q96KX0 146 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 ZCCHC4Q9H5U6 513 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 Q9UFV3 132 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 N6AMT1Q9Y5N5 214 aa12.41□□□□□ -0.42
USP39-220ENST00000613444 A0A0U1RQV5 110 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 IQCMA0A1B0GVH7 501 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 ADRA2CP18825 462 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 APEX1P27695 318 aaKnown RBP12.4□□□□□ -0.42
USP39-220ENST00000613444 STAC2Q6ZMT1 411 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 Q6ZSR3 168 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 NCCRP1Q6ZVX7 275 aaPredicted RBP12.4□□□□□ -0.42
USP39-220ENST00000613444 LRRTM1Q86UE6 522 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 CXorf67Q86X51 503 aaPredicted RBP12.4□□□□□ -0.42
USP39-220ENST00000613444 PLPP7Q8NBV4 271 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 ST6GALNAC3Q8NDV1 305 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 THRSPQ92748 146 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 GPR84Q9NQS5 396 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 DHDHQ9UQ10 334 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 RELNP78509 3460 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 P2RY6Q15077 328 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 GSG1Q2KHT4 349 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 COLCA1Q6ZS62 124 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 BEND4Q6ZU67 534 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 MDP1Q86V88 176 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 WDR31Q8NA23 367 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 PGAM5Q96HS1 289 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 POM121L2Q96KW2 1035 aa12.4□□□□□ -0.42
USP39-220ENST00000613444 ZNF275Q9NSD4 429 aaPredicted RBP12.4□□□□□ -0.42
USP39-220ENST00000613444 CIB4A0PJX0 185 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 SYT7O43581 403 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 HOXB1P14653 301 aaPredicted RBP12.39□□□□□ -0.43
USP39-220ENST00000613444 IGFBP3P17936 291 aaPredicted RBP12.39□□□□□ -0.43
USP39-220ENST00000613444 RAB3BP20337 219 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 THBS2P35442 1172 aa12.39□□□□□ -0.43
USP39-220ENST00000613444 TMEM53Q6P2H8 277 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms