RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 NXF5Q9H1B4 397 aaKnown RBP16.4■□□□□ 0.22
UPF1-210ENST00000600689 BANF2Q9H503 90 aa16.4■□□□□ 0.22
UPF1-210ENST00000600689 PCDHGA1Q9Y5H4 931 aa16.4■□□□□ 0.22
UPF1-210ENST00000600689 TMEM269A0A1B0GVZ9 245 aa16.39■□□□□ 0.22
UPF1-210ENST00000600689 A6NCN8 305 aa16.39■□□□□ 0.22
UPF1-210ENST00000600689 METTL21EPA6NDL7 271 aa16.39■□□□□ 0.22
UPF1-210ENST00000600689 C2orf74A8MZ97 194 aa16.39■□□□□ 0.22
UPF1-210ENST00000600689 HLA-DOBP13765 273 aa16.39■□□□□ 0.22
UPF1-210ENST00000600689 LPAR6P43657 344 aa16.39■□□□□ 0.22
UPF1-210ENST00000600689 OR2B8PP59922 312 aa16.39■□□□□ 0.22
UPF1-210ENST00000600689 RAB5BP61020 215 aa16.39■□□□□ 0.22
UPF1-210ENST00000600689 HABP2Q14520 560 aaPredicted RBP16.39■□□□□ 0.22
UPF1-210ENST00000600689 FAM166AQ6J272 317 aa16.39■□□□□ 0.22
UPF1-210ENST00000600689 Q6ZSR6 202 aa16.39■□□□□ 0.22
UPF1-210ENST00000600689 RNF128Q8TEB7 428 aa16.39■□□□□ 0.22
UPF1-210ENST00000600689 FOXQ1Q9C009 403 aa16.39■□□□□ 0.22
UPF1-210ENST00000600689 C2orf72A6NCS6 295 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 ZNF264O43296 627 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 CD74P04233 296 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 PNMTP11086 282 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 POLR2GP62487 172 aaKnown RBP eCLIP16.39■□□□□ 0.21
UPF1-210ENST00000600689 DCXRQ7Z4W1 244 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 OOSP2Q86WS3 158 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 EDAQ92838 391 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 TMEM41AQ96HV5 264 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 HHLA2Q9UM44 414 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 A0A1W2PP11 408 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 H0YIG0 161 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 RNASEK-C17orf49H0YIS7 233 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 M0R036 132 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 RAB27BO00194 218 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 SLC2A1P11166 492 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 PPICP45877 212 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 MST1LQ2TV78 715 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 LCN10Q6JVE6 187 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 SLC22A18ASQ8N1D0 253 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 OR13H1Q8NG92 308 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 SECTM1Q8WVN6 248 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 SULT4A1Q9BR01 284 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 EDEM2Q9BV94 578 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 CYTL1Q9NRR1 136 aa16.39■□□□□ 0.21
UPF1-210ENST00000600689 FGF16O43320 207 aa16.38■□□□□ 0.21
UPF1-210ENST00000600689 UTS2O95399 124 aa16.38■□□□□ 0.21
UPF1-210ENST00000600689 NR0B1P51843 470 aaKnown RBP16.38■□□□□ 0.21
UPF1-210ENST00000600689 RAB32Q13637 225 aa16.38■□□□□ 0.21
UPF1-210ENST00000600689 TMPRSS9Q7Z410 1059 aa16.38■□□□□ 0.21
UPF1-210ENST00000600689 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.38■□□□□ 0.21
UPF1-210ENST00000600689 PAQR4Q8N4S7 273 aaPredicted RBP16.38■□□□□ 0.21
UPF1-210ENST00000600689 LINC00469Q8N7U9 141 aa16.38■□□□□ 0.21
UPF1-210ENST00000600689 OR4K15Q8NH41 348 aa16.38■□□□□ 0.21
UPF1-210ENST00000600689 MMP26Q9NRE1 261 aa16.38■□□□□ 0.21
UPF1-210ENST00000600689 GSN-AS1Q9NRJ2 163 aa16.38■□□□□ 0.21
UPF1-210ENST00000600689 KNG1P01042 644 aa16.38■□□□□ 0.21
UPF1-210ENST00000600689 IL11P20809 199 aa16.38■□□□□ 0.21
UPF1-210ENST00000600689 ARRB1P49407 418 aaPredicted RBP16.38■□□□□ 0.21
UPF1-210ENST00000600689 FABP9Q0Z7S8 132 aa16.38■□□□□ 0.21
UPF1-210ENST00000600689 MEF2DQ14814 521 aa16.38■□□□□ 0.21
UPF1-210ENST00000600689 KCTD18Q6PI47 426 aaPredicted RBP16.38■□□□□ 0.21
UPF1-210ENST00000600689 CHRDQ9H2X0 955 aa16.38■□□□□ 0.21
UPF1-210ENST00000600689 CD207Q9UJ71 328 aa16.38■□□□□ 0.21
UPF1-210ENST00000600689 SLC5A6Q9Y289 635 aa16.38■□□□□ 0.21
UPF1-210ENST00000600689 SLCO1B1Q9Y6L6 691 aa16.38■□□□□ 0.21
UPF1-210ENST00000600689 PRSS37A4D1T9 235 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 A6NLC8 198 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 C17orf105B2RV13 164 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 TNFSF14O43557 240 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 MPIG6BO95866 241 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 RNH1P13489 461 aaKnown RBP16.37■□□□□ 0.21
UPF1-210ENST00000600689 ZNF14P17017 642 aaPredicted RBP16.37■□□□□ 0.21
UPF1-210ENST00000600689 GABRG2P18507 467 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 SKP2Q13309 424 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 ISXQ2M1V0 245 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 EIF2S3LQ2VIR3 472 aaKnown RBP16.37■□□□□ 0.21
UPF1-210ENST00000600689 RCC2Q9P258 522 aaKnown RBP16.37■□□□□ 0.21
UPF1-210ENST00000600689 PCOLCE2Q9UKZ9 415 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 hCG_1809904A0A1W2PP81 198 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 A0A1W2PR64 198 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 A0A1W2PRV1 198 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 TTLL8A6PVC2 850 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 C1orf196B1AJZ1 125 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 CD79AP11912 226 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 NQO2P16083 231 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 GPR3P46089 330 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 UNC119Q13432 240 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 MICBQ29980 383 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 ZNF260Q3ZCT1 412 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 AWAT2Q6E213 333 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 OR10C1Q96KK4 312 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 UBQLN4Q9NRR5 601 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 OR52A1Q9UKL2 312 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 A0A0J9YY10 115 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 FAM157CP0CG43 387 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 RAB6AP20340 208 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 ABCD3P28288 659 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 SCAND1P57086 179 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 ARMC6Q6NXE6 501 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 DRAM2Q6UX65 266 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 SEMA6DQ8NFY4 1073 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 OR5D18Q8NGL1 313 aa16.37■□□□□ 0.21
UPF1-210ENST00000600689 SLC37A2Q8TED4 501 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms