RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 HGFACQ04756 655 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 ODF4Q2M2E3 257 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 FBXL19-AS1Q494R0 122 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 YIF1BQ5BJH7 314 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 PRSS45Q7RTY3 260 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 MS4A15Q8N5U1 240 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 SLC30A7Q8NEW0 376 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 OR8B12Q8NGG6 310 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 LILRB4Q8NHJ6 448 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 CA5BP1Q8WTZ4 195 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 RPL3LQ92901 407 aaKnown RBP12.74□□□□□ -0.37
VRK3-212ENST00000596814 PPP1R14AQ96A00 147 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 PGAM5Q96HS1 289 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 POM121L2Q96KW2 1035 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 CHCHD6Q9BRQ6 235 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 MOV10Q9HCE1 1003 aaKnown RBP12.74□□□□□ -0.37
VRK3-212ENST00000596814 EXOSC4Q9NPD3 245 aaKnown RBP12.74□□□□□ -0.37
VRK3-212ENST00000596814 RSL24D1Q9UHA3 163 aaKnown RBP12.74□□□□□ -0.37
VRK3-212ENST00000596814 N6AMT1Q9Y5N5 214 aa12.74□□□□□ -0.37
VRK3-212ENST00000596814 GPX5O75715 221 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 TTRP02766 147 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 HLA-DPB1P04440 258 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 CELA3BP08861 270 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 CCL2P13500 99 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 CCNOP22674 350 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 FABP5Q01469 135 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 TAB1Q15750 504 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 TBC1D28Q2M2D7 210 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 C1QTNF12Q5T7M4 302 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 CD200R1LQ6Q8B3 271 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 ZNF704Q6ZNC4 412 aaPredicted RBP12.73□□□□□ -0.37
VRK3-212ENST00000596814 NAA40Q86UY6 237 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 ELMOD2Q8IZ81 293 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 OR13C5Q8NGS8 318 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 RGP1Q92546 391 aaPredicted RBP12.73□□□□□ -0.37
VRK3-212ENST00000596814 MUCL1Q96DR8 90 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 DCLRE1CQ96SD1 692 aaKnown RBP12.73□□□□□ -0.37
VRK3-212ENST00000596814 BCL7BQ9BQE9 202 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 OR10A4Q9H209 315 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 SP140LQ9H930 580 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 SSR3Q9UNL2 185 aa12.73□□□□□ -0.37
VRK3-212ENST00000596814 ZNF701M0R085 212 aaPredicted RBP12.72□□□□□ -0.37
VRK3-212ENST00000596814 GABRPO00591 440 aa12.72□□□□□ -0.37
VRK3-212ENST00000596814 SERPINA3P01011 423 aa12.72□□□□□ -0.37
VRK3-212ENST00000596814 GALP22466 123 aa12.72□□□□□ -0.37
VRK3-212ENST00000596814 PAX7P23759 505 aa12.72□□□□□ -0.37
VRK3-212ENST00000596814 LSM3P62310 102 aaKnown RBP12.72□□□□□ -0.37
VRK3-212ENST00000596814 PPA1Q15181 289 aa12.72□□□□□ -0.37
VRK3-212ENST00000596814 CTF1Q16619 201 aa12.72□□□□□ -0.37
VRK3-212ENST00000596814 GDPGP1Q6ZNW5 385 aa12.72□□□□□ -0.37
VRK3-212ENST00000596814 MYPOPQ86VE0 399 aaPredicted RBP12.72□□□□□ -0.37
VRK3-212ENST00000596814 FAM169BQ8N8A8 192 aa12.72□□□□□ -0.37
VRK3-212ENST00000596814 OR52H1Q8NGJ2 320 aa12.72□□□□□ -0.37
VRK3-212ENST00000596814 DGCR14Q96DF8 476 aaKnown RBP12.72□□□□□ -0.37
VRK3-212ENST00000596814 LRRC46Q96FV0 321 aa12.72□□□□□ -0.37
VRK3-212ENST00000596814 TRMT61AQ96FX7 289 aaKnown RBP12.72□□□□□ -0.37
VRK3-212ENST00000596814 C1QTNF6Q9BXI9 259 aa12.72□□□□□ -0.37
VRK3-212ENST00000596814 SLC24A3Q9HC58 644 aa12.72□□□□□ -0.37
VRK3-212ENST00000596814 CRNNQ9UBG3 495 aaPredicted RBP12.72□□□□□ -0.37
VRK3-212ENST00000596814 LOC107986453A0A1B0GWG9 222 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 TRDV1A0A1B0GX56 115 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 NKX2-6A6NCS4 301 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 H3BMQ9 156 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 TBX1O43435 398 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 IGLV1-44P01699 117 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 LCATP04180 440 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 ACHEP22303 614 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 ANOS1P23352 680 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 RPS11P62280 158 aaKnown RBP eCLIP12.71□□□□□ -0.37
VRK3-212ENST00000596814 INSL4Q14641 139 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 SNAI3Q3KNW1 292 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 TMEM244Q5VVB8 128 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 RDH10Q8IZV5 341 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 OR1J2Q8NGS2 313 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 ABHD4Q8TB40 342 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 RNASE6Q93091 150 aaKnown RBP12.71□□□□□ -0.37
VRK3-212ENST00000596814 C12orf43Q96C57 262 aaKnown RBP12.71□□□□□ -0.37
VRK3-212ENST00000596814 CENPOQ9BU64 300 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 OR10A2Q9H208 303 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 ZNF319Q9P2F9 582 aa12.71□□□□□ -0.37
VRK3-212ENST00000596814 H3BSH0 61 aa12.71□□□□□ -0.38
VRK3-212ENST00000596814 P2RY10O00398 339 aa12.71□□□□□ -0.38
VRK3-212ENST00000596814 ISG15P05161 165 aa12.71□□□□□ -0.38
VRK3-212ENST00000596814 CECR9P0C854 216 aa12.71□□□□□ -0.38
VRK3-212ENST00000596814 VBP1P61758 197 aa12.71□□□□□ -0.38
VRK3-212ENST00000596814 GFOD2Q3B7J2 385 aa12.71□□□□□ -0.38
VRK3-212ENST00000596814 ACSM3Q53FZ2 586 aa12.71□□□□□ -0.38
VRK3-212ENST00000596814 TMEM91Q6ZNR0 172 aa12.71□□□□□ -0.38
VRK3-212ENST00000596814 COMMD2Q86X83 199 aa12.71□□□□□ -0.38
VRK3-212ENST00000596814 OR10AC1Q8NH08 325 aa12.71□□□□□ -0.38
VRK3-212ENST00000596814 GPR148Q8TDV2 347 aa12.71□□□□□ -0.38
VRK3-212ENST00000596814 TSEN15Q8WW01 171 aaKnown RBP12.71□□□□□ -0.38
VRK3-212ENST00000596814 C1QTNF5Q9BXJ0 243 aa12.71□□□□□ -0.38
VRK3-212ENST00000596814 CDH20Q9HBT6 801 aa12.71□□□□□ -0.38
VRK3-212ENST00000596814 KCNJ16Q9NPI9 418 aa12.71□□□□□ -0.38
VRK3-212ENST00000596814 TXNL4BQ9NX01 149 aaKnown RBP12.71□□□□□ -0.38
VRK3-212ENST00000596814 HHLA2Q9UM44 414 aa12.71□□□□□ -0.38
VRK3-212ENST00000596814 PRR14LQ5THK1 2151 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 FAM208BQ5VWN6 2430 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 A0A0U1RQV5 110 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms