RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 FAM234AQ9H0X4 552 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 RNF167Q9H6Y7 350 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 POLE4Q9NR33 117 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 DEPPQ9NTK1 212 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 TAS2R4Q9NYW5 299 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 SCP2D1Q9UJQ7 156 aa8.2□□□□□ -1.1
VPS39-205ENST00000562258 NOP16Q9Y3C1 178 aaKnown RBP8.2□□□□□ -1.1
VPS39-205ENST00000562258 AHRRA9YTQ3 701 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 MCRIP1C9JLW8 97 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 SLC33A1O00400 549 aaPredicted RBP8.19□□□□□ -1.1
VPS39-205ENST00000562258 RAMP1O60894 148 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 GLRA1P23415 457 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 LIPAP38571 399 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 RBP2P50120 134 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 GALEQ14376 348 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 TAF9Q16594 264 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 TBR1Q16650 682 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 SFRP5Q5T4F7 317 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 GLIPR1L1Q6UWM5 242 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 ZNF441Q8N8Z8 693 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 OR56B2PQ8NGI1 322 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 OR6Q1Q8NGQ2 317 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 OR2G2Q8NGZ5 317 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 OR6X1Q8NH79 312 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 LINC01560Q8TB33 94 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 SNRNP40Q96DI7 357 aaKnown RBP8.19□□□□□ -1.1
VPS39-205ENST00000562258 MNTQ99583 582 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 ABRACLQ9P1F3 81 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 C3orf80F5H4A9 247 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 ABCD4O14678 606 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 LRRTM2O43300 516 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 PPIHO43447 177 aaKnown RBP8.19□□□□□ -1.1
VPS39-205ENST00000562258 AMY2AP04746 511 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 PTH2RP49190 550 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 EIF2B2P49770 351 aaKnown RBP8.19□□□□□ -1.1
VPS39-205ENST00000562258 TMBIM6P55061 237 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 MESTQ5EB52 335 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 GDPD3Q7L5L3 318 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 EGFL6Q8IUX8 553 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 FBXW5Q969U6 566 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 CMSS1Q9BQ75 279 aaKnown RBP8.19□□□□□ -1.1
VPS39-205ENST00000562258 GPN1Q9HCN4 374 aaPredicted RBP8.19□□□□□ -1.1
VPS39-205ENST00000562258 NRIP3Q9NQ35 241 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 EDARQ9UNE0 448 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 C14orf166Q9Y224 244 aaKnown RBP8.19□□□□□ -1.1
VPS39-205ENST00000562258 LRP12Q9Y561 859 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 HTR2CP28335 458 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 MPGP29372 298 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 AP2S1P53680 142 aaPredicted RBP8.19□□□□□ -1.1
VPS39-205ENST00000562258 PAN3Q58A45 887 aaKnown RBP8.19□□□□□ -1.1
VPS39-205ENST00000562258 TSEN54Q7Z6J9 526 aaKnown RBP8.19□□□□□ -1.1
VPS39-205ENST00000562258 SLC22A24Q8N4F4 322 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 OTOSQ8NHW6 89 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 HAVCR2Q8TDQ0 301 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 ASB5Q8WWX0 329 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 APOBEC3DQ96AK3 386 aaPredicted RBP8.19□□□□□ -1.1
VPS39-205ENST00000562258 MSL2Q9HCI7 577 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 LIPGQ9Y5X9 500 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 FREM3P0C091 2139 aa8.19□□□□□ -1.1
VPS39-205ENST00000562258 UBL3O95164 117 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 PRKACAP17612 351 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 GZMMP51124 257 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 HMGA2P52926 109 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 LGALS4P56470 323 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 LTBQ06643 244 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 FAM27E3Q08E93 113 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 ATXN7L3Q14CW9 347 aaPredicted RBP8.18□□□□□ -1.1
VPS39-205ENST00000562258 DOK3Q7L591 496 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 ELMOD3Q96FG2 381 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 GMPPAQ96IJ6 420 aaPredicted RBP8.18□□□□□ -1.1
VPS39-205ENST00000562258 RTN4RQ9BZR6 473 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 MMP27Q9H306 513 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 LPAR2Q9HBW0 351 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 KLK4Q9Y5K2 254 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 COL4A3Q01955 1670 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 ZNF732B4DXR9 585 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 SLC35A2P78381 396 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 LRRC37A5PQ49AS3 106 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 ZBTB8BQ8NAP8 495 aaPredicted RBP8.18□□□□□ -1.1
VPS39-205ENST00000562258 OR10AD1Q8NGE0 317 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 OPALINQ96PE5 141 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 USB1Q9BQ65 265 aaKnown RBP8.18□□□□□ -1.1
VPS39-205ENST00000562258 RTL8AQ9BWD3 113 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 GABARAPL3Q9BY60 117 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 PLK3Q9H4B4 646 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 GPR35Q9HC97 309 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 SLC52A3Q9NQ40 469 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 TMEM100Q9NV29 134 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 COPZ2Q9P299 210 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 CHST2Q9Y4C5 530 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 SIRPB1O00241 398 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 HPGDSO60760 199 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 TFAP2AP05549 437 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 AKR1C4P17516 323 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 CD53P19397 219 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 TGM1P22735 817 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 AKR1C2P52895 323 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 ZNF239Q16600 458 aaKnown RBP8.18□□□□□ -1.1
VPS39-205ENST00000562258 CNIH2Q6PI25 160 aa8.18□□□□□ -1.1
VPS39-205ENST00000562258 GATA6Q92908 595 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms