RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 EXOGQ9Y2C4 368 aaKnown RBP8.68□□□□□ -1.02
USP3-216ENST00000559873 KLHDC2Q9Y2U9 406 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 LRP12Q9Y561 859 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 PMF1-BGLAPU3KQ54 211 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 POLQO75417 2590 aa8.68□□□□□ -1.02
USP3-216ENST00000559873 A0A1W2PQL4 384 aaPredicted RBP8.67□□□□□ -1.02
USP3-216ENST00000559873 PLSCR5A0PG75 271 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 ACOD1A6NK06 481 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 M0R233 179 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 ATE1O95260 518 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 IGHA1P01876 353 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 TACSTD2P09758 323 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 DANCRP0C864 163 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 ZNF250P15622 560 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 SELEP16581 610 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 LIPAP38571 399 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 HCCSP53701 268 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 MRPL28Q13084 256 aaKnown RBP8.67□□□□□ -1.02
USP3-216ENST00000559873 CDK5R2Q13319 367 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 TIGD6Q17RP2 521 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 MBNL2Q5VZF2 373 aaKnown RBP8.67□□□□□ -1.02
USP3-216ENST00000559873 COLCA1Q6ZS62 124 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 MRPL21Q7Z2W9 205 aaKnown RBP8.67□□□□□ -1.02
USP3-216ENST00000559873 KCTD20Q7Z5Y7 419 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 EGFL6Q8IUX8 553 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 YIPF7Q8N8F6 280 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 BPIFB6Q8NFQ5 453 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 KLF14Q8TD94 323 aaPredicted RBP8.67□□□□□ -1.02
USP3-216ENST00000559873 PGAM5Q96HS1 289 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 CNBD2Q96M20 576 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 TRAF4Q9BUZ4 470 aaPredicted RBP8.67□□□□□ -1.02
USP3-216ENST00000559873 ALG8Q9BVK2 526 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 JAM3Q9BX67 310 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 TTTY10Q9BZA0 68 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 OR2J1Q9GZK6 312 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 CYSLTR2Q9NS75 346 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 PLCXD1Q9NUJ7 323 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 DUSP13Q9UII6 198 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 DIMT1Q9UNQ2 313 aaKnown RBP8.67□□□□□ -1.02
USP3-216ENST00000559873 EXOSC1Q9Y3B2 195 aaKnown RBP8.67□□□□□ -1.02
USP3-216ENST00000559873 TPRKBQ9Y3C4 175 aa8.67□□□□□ -1.02
USP3-216ENST00000559873 IGLV3-9A0A075B6K5 115 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 TMEM269A0A1B0GVZ9 245 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 METTL15A6NJ78 407 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 LOC110117498-PIK3R3F6TDL0 507 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 J3QRE1 110 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 TBX1O43435 398 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 TIMM8AO60220 97 aaPredicted RBP8.66□□□□□ -1.02
USP3-216ENST00000559873 NGFP01138 241 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 SOD3P08294 240 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 CCDC159P0C7I6 412 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 RAC2P15153 192 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 ZNF121P58317 390 aaPredicted RBP8.66□□□□□ -1.02
USP3-216ENST00000559873 KRTAP10-9P60411 292 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 ERVS71-1P61550 626 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 SMN1Q16637 294 aaKnown RBP8.66□□□□□ -1.02
USP3-216ENST00000559873 CDONQ4KMG0 1287 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 SPATA46Q5T0L3 261 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 BCL2L15Q5TBC7 163 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 TMPRSS11AQ6ZMR5 421 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 FAM57BQ71RH2 274 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 PGAP1Q75T13 922 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 SYS1Q8N2H4 156 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 STX19Q8N4C7 294 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 FTMTQ8N4E7 242 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 RFLNBQ8N5W9 214 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 ZNF540Q8NDQ6 660 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 OR52I1Q8NGK6 324 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 ITFG2Q969R8 447 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 TRMT61AQ96FX7 289 aaKnown RBP8.66□□□□□ -1.02
USP3-216ENST00000559873 MARS2Q96GW9 593 aaKnown RBP8.66□□□□□ -1.02
USP3-216ENST00000559873 TMEM80Q96HE8 168 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 SYT3Q9BQG1 590 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 MRPL37Q9BZE1 423 aaKnown RBP8.66□□□□□ -1.02
USP3-216ENST00000559873 MS4A5Q9H3V2 200 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 FGF20Q9NP95 211 aaPredicted RBP8.66□□□□□ -1.02
USP3-216ENST00000559873 BEX4Q9NWD9 120 aaPredicted RBP8.66□□□□□ -1.02
USP3-216ENST00000559873 PTTG3PQ9NZH4 202 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 GNG8Q9UK08 70 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 GTF2A1LQ9UNN4 478 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 PLEKHA6Q9Y2H5 1048 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 NOP16Q9Y3C1 178 aaKnown RBP8.66□□□□□ -1.02
USP3-216ENST00000559873 N6AMT1Q9Y5N5 214 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 SNX5Q9Y5X3 404 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 R4GMQ9 66 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 CCDC168Q8NDH2 2452 aa8.66□□□□□ -1.02
USP3-216ENST00000559873 RAI1Q7Z5J4 1906 aaPredicted RBP8.65□□□□□ -1.02
USP3-216ENST00000559873 PSMD9O00233 223 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 SLC1A7O00341 560 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 MYL12BO14950 172 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 DENRO43583 198 aaKnown RBP8.65□□□□□ -1.02
USP3-216ENST00000559873 IGHV3-13P01766 116 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 RPSAP08865 295 aaKnown RBP8.65□□□□□ -1.02
USP3-216ENST00000559873 SLC2A1P11166 492 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 KITLGP21583 273 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 PPOXP50336 477 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 MMP16P51512 607 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 ZNF85Q03923 595 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 GALEQ14376 348 aa8.65□□□□□ -1.02
USP3-216ENST00000559873 RSPO1Q2MKA7 263 aaPredicted RBP8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms