RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 FAM3DQ96BQ1 224 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 RRNAD1Q96FB5 475 aaKnown RBP9.76□□□□□ -0.85
USP3-206ENST00000558157 MISP3Q96FF7 219 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 SOX7Q9BT81 388 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 SLC5A7Q9GZV3 580 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 COMMD4Q9H0A8 199 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 CST11Q9H112 138 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 SMDT1Q9H4I9 107 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 UNKLQ9H9P5 680 aaKnown RBP9.76□□□□□ -0.85
USP3-206ENST00000558157 DOK5Q9P104 306 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 MRPS33Q9Y291 106 aaKnown RBP9.76□□□□□ -0.85
USP3-206ENST00000558157 KNL1Q8NG31 2342 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 KMT2EQ8IZD2 1858 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 SDK1Q7Z5N4 2213 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 CXorf65A6NEN9 183 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 M0QYG6 137 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 PPP1R2P9O14990 202 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 GMFGO60234 142 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 ERAL1O75616 437 aaKnown RBP9.76□□□□□ -0.85
USP3-206ENST00000558157 GAPDHP04406 335 aaKnown RBP9.76□□□□□ -0.85
USP3-206ENST00000558157 DBIP07108 87 aaKnown RBP9.76□□□□□ -0.85
USP3-206ENST00000558157 HIST1H1CP16403 213 aaKnown RBP9.76□□□□□ -0.85
USP3-206ENST00000558157 RPS4Y1P22090 263 aaKnown RBP9.76□□□□□ -0.85
USP3-206ENST00000558157 RAP1AP62834 184 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 C2orf76Q3KRA6 126 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 ZNF574Q6ZN55 896 aaPredicted RBP9.76□□□□□ -0.85
USP3-206ENST00000558157 MAMDC2Q7Z304 686 aaPredicted RBP9.76□□□□□ -0.85
USP3-206ENST00000558157 BIVMQ86UB2 503 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 CCDC116Q8IYX3 515 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 PMM1Q92871 262 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 MCHR2Q969V1 340 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 CNRIP1Q96F85 164 aaPredicted RBP9.76□□□□□ -0.85
USP3-206ENST00000558157 SLC35A4Q96G79 324 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 FKRPQ9H9S5 495 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 PILRBQ9UKJ0 227 aa9.76□□□□□ -0.85
USP3-206ENST00000558157 SNRNP200O75643 2136 aaKnown RBP9.75□□□□□ -0.85
USP3-206ENST00000558157 TTC28Q96AY4 2481 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 TRAV8-7A0A075B6U6 113 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 PRICKLE3O43900 615 aaPredicted RBP9.75□□□□□ -0.85
USP3-206ENST00000558157 UPK3AO75631 287 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 PIAS2O75928 621 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 NDUFB2O95178 105 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 CST4P01036 141 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 MAS1P04201 325 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 TBPP20226 339 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 LSM6P62312 80 aaKnown RBP9.75□□□□□ -0.85
USP3-206ENST00000558157 SNRPNP63162 240 aaKnown RBP9.75□□□□□ -0.85
USP3-206ENST00000558157 GAMTQ14353 236 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 SURF2Q15527 256 aaPredicted RBP9.75□□□□□ -0.85
USP3-206ENST00000558157 TGIF1Q15583 401 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 DEFB133Q30KQ1 61 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 SCGB2B2Q4G0G5 96 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 RNASE10Q5GAN6 216 aaKnown RBP9.75□□□□□ -0.85
USP3-206ENST00000558157 FAM166AQ6J272 317 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 ZNF761Q86XN6 746 aaPredicted RBP9.75□□□□□ -0.85
USP3-206ENST00000558157 TGIF2LXQ8IUE1 241 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 ZNF584Q8IVC4 421 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 ZNF610Q8N9Z0 462 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 OR7G2Q8NG99 324 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 OR2A1Q8NGT9 310 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 M1APQ8TC57 530 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 SLC6A7Q99884 636 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 NMNAT2Q9BZQ4 307 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 SRMSQ9H3Y6 488 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 RAB18Q9NP72 206 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 HDGFL3Q9Y3E1 203 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 A0A0C4DFX4 3053 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 OR1F1O43749 312 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 NUDT21O43809 227 aaKnown RBP9.75□□□□□ -0.85
USP3-206ENST00000558157 GLCEO94923 617 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 OR2C1O95371 312 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 CSTBP04080 98 aaKnown RBP9.75□□□□□ -0.85
USP3-206ENST00000558157 NID1P14543 1247 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 SERPINF1P36955 418 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 SNCAP37840 140 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 MC3RP41968 323 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 NDUFA6P56556 154 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 HHEXQ03014 270 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 RASGEF1BQ0VAM2 473 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 ACTBL2Q562R1 376 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 SLC48A1Q6P1K1 146 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 CLEC9AQ6UXN8 241 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 OR4K13Q8NH42 304 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 TMEM106AQ96A25 262 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 ZNF775Q96BV0 537 aaPredicted RBP9.75□□□□□ -0.85
USP3-206ENST00000558157 MOGAT1Q96PD6 335 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 TNFRSF13CQ96RJ3 184 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 FSCN3Q9NQT6 498 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 FRRS1LQ9P0K9 344 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 CES1P1Q9UKY3 287 aa9.75□□□□□ -0.85
USP3-206ENST00000558157 MDC1Q14676 2089 aaKnown RBP9.75□□□□□ -0.85
USP3-206ENST00000558157 A0A087WUJ7 227 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 IGKV1-8A0A0C4DH67 115 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 FAM221BA6H8Z2 402 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 OR5H15A6NDH6 313 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 OR5H1A6NKK0 313 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 EFSO43281 561 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 ALOX12BO75342 701 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 ADAP1O75689 374 aa9.74□□□□□ -0.85
USP3-206ENST00000558157 JTBO76095 146 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms