RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 ECHDC3Q96DC8 303 aa3.09□□□□□ -1.91
PRPF39-210ENST00000556718 DNAJC1Q96KC8 554 aaKnown RBP3.09□□□□□ -1.91
PRPF39-210ENST00000556718 JSRP1Q96MG2 331 aaPredicted RBP3.09□□□□□ -1.91
PRPF39-210ENST00000556718 P2RX4Q99571 388 aa3.09□□□□□ -1.91
PRPF39-210ENST00000556718 CIB1Q99828 191 aa3.09□□□□□ -1.91
PRPF39-210ENST00000556718 YTHDF1Q9BYJ9 559 aaKnown RBP3.09□□□□□ -1.91
PRPF39-210ENST00000556718 DEFB127Q9H1M4 99 aa3.09□□□□□ -1.91
PRPF39-210ENST00000556718 PSTPIP2Q9H939 334 aa3.09□□□□□ -1.91
PRPF39-210ENST00000556718 UGT1A10Q9HAW8 530 aa3.09□□□□□ -1.91
PRPF39-210ENST00000556718 SLC39A1Q9NY26 324 aa3.09□□□□□ -1.91
PRPF39-210ENST00000556718 CLCF1Q9UBD9 225 aa3.09□□□□□ -1.91
PRPF39-210ENST00000556718 PEF1Q9UBV8 284 aaKnown RBP3.09□□□□□ -1.91
PRPF39-210ENST00000556718 LGALS13Q9UHV8 139 aa3.09□□□□□ -1.91
PRPF39-210ENST00000556718 STOML2Q9UJZ1 356 aa3.09□□□□□ -1.91
PRPF39-210ENST00000556718 CFL2Q9Y281 166 aa3.09□□□□□ -1.91
PRPF39-210ENST00000556718 CHTOPQ9Y3Y2 248 aaKnown RBP3.09□□□□□ -1.91
PRPF39-210ENST00000556718 HMGXB3Q12766 1538 aa3.09□□□□□ -1.92
PRPF39-210ENST00000556718 CROCC2H7BZ55 1655 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 CASZ1Q86V15 1759 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 A0A0G2JN53 185 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 ISPDA4D126 451 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 PSMB11A5LHX3 300 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 GJE1A6NN92 205 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 LYRM9A8MSI8 78 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 CENPXA8MT69 81 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 MIF4GDA9UHW6 222 aaKnown RBP3.08□□□□□ -1.92
PRPF39-210ENST00000556718 ERVV-1B6SEH8 477 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 E7EWF7 191 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 I3L4J1 428 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 RNF113AO15541 343 aaKnown RBP3.08□□□□□ -1.92
PRPF39-210ENST00000556718 AKR7A2O43488 359 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 CHMP2AO43633 222 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 NMT2O60551 498 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 EDF1O60869 148 aaKnown RBP3.08□□□□□ -1.92
PRPF39-210ENST00000556718 SULT1C4O75897 302 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 MYO1DO94832 1006 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 CTDNEP1O95476 244 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 IGKV3-15P01624 115 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 APOA1P02647 267 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 PLEKP08567 350 aaPredicted RBP3.08□□□□□ -1.92
PRPF39-210ENST00000556718 PSMC3P17980 439 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 MSR1P21757 451 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 CFL1P23528 166 aaKnown RBP3.08□□□□□ -1.92
PRPF39-210ENST00000556718 AK4P27144 223 aaPredicted RBP3.08□□□□□ -1.92
PRPF39-210ENST00000556718 RPS5P46782 204 aaKnown RBP3.08□□□□□ -1.92
PRPF39-210ENST00000556718 CCR8P51685 355 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 AP2S1P53680 142 aaPredicted RBP3.08□□□□□ -1.92
PRPF39-210ENST00000556718 CLDN8P56748 225 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 KRTAP10-1P60331 282 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 STXBP1P61764 594 aaKnown RBP3.08□□□□□ -1.92
PRPF39-210ENST00000556718 AQP6Q13520 282 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 GPNMBQ14956 572 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 TRIP13Q15645 432 aaPredicted RBP3.08□□□□□ -1.92
PRPF39-210ENST00000556718 PGGHGQ32M88 737 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 TNFAIP8L3Q5GJ75 292 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 LCE1CQ5T751 118 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 LCE1BQ5T7P3 118 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 LCN12Q6JVE5 192 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 SPESP1Q6UW49 350 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 ARPINQ7Z6K5 226 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 THOC6Q86W42 341 aaKnown RBP3.08□□□□□ -1.92
PRPF39-210ENST00000556718 RALGPS2Q86X27 583 aaPredicted RBP3.08□□□□□ -1.92
PRPF39-210ENST00000556718 STX12Q86Y82 276 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 TGIF2LYQ8IUE0 185 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 LINC00612Q8N6U2 182 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 ZNF321PQ8N8H1 164 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 ASCC1Q8N9N2 400 aaKnown RBP3.08□□□□□ -1.92
PRPF39-210ENST00000556718 MCOLN3Q8TDD5 553 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 CAPSLQ8WWF8 208 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 GEMIN6Q8WXD5 167 aaKnown RBP3.08□□□□□ -1.92
PRPF39-210ENST00000556718 TAMM41Q96BW9 452 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 BCL7BQ9BQE9 202 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 MROQ9BYG7 248 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 ACTR3CQ9C0K3 210 aaPredicted RBP3.08□□□□□ -1.92
PRPF39-210ENST00000556718 LYRM4Q9HD34 91 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 PXMP2Q9NR77 195 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 SLC17A4Q9Y2C5 497 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.08□□□□□ -1.92
PRPF39-210ENST00000556718 ZNF532Q9HCE3 1301 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 PXDNLA1KZ92 1463 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 ABCC6O95255 1503 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 URB2Q14146 1524 aaKnown RBP3.08□□□□□ -1.92
PRPF39-210ENST00000556718 GLI2P10070 1586 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 ADCY10Q96PN6 1610 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 MYOM1P52179 1685 aa3.08□□□□□ -1.92
PRPF39-210ENST00000556718 CEP152O94986 1710 aa3.07□□□□□ -1.92
PRPF39-210ENST00000556718 KCNE1BA0A087WTH5 132 aa3.07□□□□□ -1.92
PRPF39-210ENST00000556718 KIR2DL5BA0A0G2JN68 375 aa3.07□□□□□ -1.92
PRPF39-210ENST00000556718 KIR2DL5BA0A0G2JPC4 375 aa3.07□□□□□ -1.92
PRPF39-210ENST00000556718 ZNF816-ZNF321PA0A0X1KG74 233 aa3.07□□□□□ -1.92
PRPF39-210ENST00000556718 GSTTP1A0A1W2PQM5 241 aa3.07□□□□□ -1.92
PRPF39-210ENST00000556718 ZNF726A6NNF4 738 aa3.07□□□□□ -1.92
PRPF39-210ENST00000556718 CLDN25C9JDP6 229 aa3.07□□□□□ -1.92
PRPF39-210ENST00000556718 F6UB75 175 aa3.07□□□□□ -1.92
PRPF39-210ENST00000556718 H3BSA7 217 aa3.07□□□□□ -1.92
PRPF39-210ENST00000556718 TEX46H3BTG2 121 aa3.07□□□□□ -1.92
PRPF39-210ENST00000556718 TRDMT1O14717 391 aaKnown RBP3.07□□□□□ -1.92
PRPF39-210ENST00000556718 POLR1CO15160 346 aaPredicted RBP3.07□□□□□ -1.92
PRPF39-210ENST00000556718 RTL8CO15255 209 aa3.07□□□□□ -1.92
PRPF39-210ENST00000556718 EIF4E2O60573 245 aaKnown RBP3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms