RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 ARHGEF35A5YM69 484 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 LYRM9A8MSI8 78 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 SYCE1LA8MT33 242 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 PLPP1O14494 284 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 AIM2O14862 343 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 RAB29O14966 203 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 PALMO75781 387 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 GATBO75879 557 aaKnown RBP1.37□□□□□ -2.19
SCFD1-216ENST00000555550 IGLV2-8P01709 118 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 ARG1P05089 322 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 ATF6P18850 670 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 NAA10P41227 235 aaPredicted RBP1.37□□□□□ -2.19
SCFD1-216ENST00000555550 TAS2R46P59540 309 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 GPM6BQ13491 265 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 PNOCQ13519 176 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 NBPF5PQ86XG9 351 aaPredicted RBP1.37□□□□□ -2.19
SCFD1-216ENST00000555550 C11orf72Q8NBR9 251 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 GPR26Q8NDV2 337 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 OR2Z1Q8NG97 314 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 OR52E2Q8NGJ4 325 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 OR8J1Q8NGP2 316 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 DUS3LQ96G46 650 aaKnown RBP1.37□□□□□ -2.19
SCFD1-216ENST00000555550 ZBED3Q96IU2 234 aaPredicted RBP1.37□□□□□ -2.19
SCFD1-216ENST00000555550 SAMD10Q9BYL1 202 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 LINC00574Q9H8X3 128 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 IL37Q9NZH6 218 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 PSMC3IPQ9P2W1 217 aaPredicted RBP1.37□□□□□ -2.19
SCFD1-216ENST00000555550 LGALS13Q9UHV8 139 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 ISY1Q9ULR0 285 aaKnown RBP1.37□□□□□ -2.19
SCFD1-216ENST00000555550 YARS2Q9Y2Z4 477 aaKnown RBP1.37□□□□□ -2.19
SCFD1-216ENST00000555550 STARD10Q9Y365 291 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 ADGRA3Q8IWK6 1321 aa1.37□□□□□ -2.19
SCFD1-216ENST00000555550 FAM240BA0A1B0GVZ2 78 aa1.36□□□□□ -2.19
SCFD1-216ENST00000555550 SMCO2A6NFE2 343 aa1.36□□□□□ -2.19
SCFD1-216ENST00000555550 E7EQL1 145 aa1.36□□□□□ -2.19
SCFD1-216ENST00000555550 SMKR1H3BMG3 65 aa1.36□□□□□ -2.19
SCFD1-216ENST00000555550 SERPINB7O75635 380 aa1.36□□□□□ -2.19
SCFD1-216ENST00000555550 ANXA5P08758 320 aa1.36□□□□□ -2.19
SCFD1-216ENST00000555550 INAFM2P0DMQ5 153 aa1.36□□□□□ -2.19
SCFD1-216ENST00000555550 CD28P10747 220 aa1.36□□□□□ -2.19
SCFD1-216ENST00000555550 HSPD1P10809 573 aaKnown RBP1.36□□□□□ -2.19
SCFD1-216ENST00000555550 ZNF43P17038 809 aa1.36□□□□□ -2.19
SCFD1-216ENST00000555550 SLC25A35Q3KQZ1 300 aa1.36□□□□□ -2.19
SCFD1-216ENST00000555550 PPM1LQ5SGD2 360 aa1.36□□□□□ -2.19
SCFD1-216ENST00000555550 ZFAND6Q6FIF0 208 aa1.36□□□□□ -2.19
SCFD1-216ENST00000555550 MDP1Q86V88 176 aa1.36□□□□□ -2.19
SCFD1-216ENST00000555550 FAM71AQ8IYT1 594 aa1.36□□□□□ -2.19
SCFD1-216ENST00000555550 TMEM243Q9BU79 118 aa1.36□□□□□ -2.19
SCFD1-216ENST00000555550 NUDT9Q9BW91 350 aa1.36□□□□□ -2.19
SCFD1-216ENST00000555550 PDP1Q9P0J1 537 aaPredicted RBP1.36□□□□□ -2.19
SCFD1-216ENST00000555550 USP47Q96K76 1375 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 NACADO15069 1562 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 TNFRSF11BO00300 401 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 OR7C2O60412 319 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 SCELO95171 688 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 TSPAN13O95857 204 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 IL32P24001 234 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 GBX2P52951 348 aaPredicted RBP1.35□□□□□ -2.19
SCFD1-216ENST00000555550 CMC4P56277 68 aaPredicted RBP1.35□□□□□ -2.19
SCFD1-216ENST00000555550 BTN1A1Q13410 526 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 ART3Q13508 389 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 DDX39BQ13838 428 aaKnown RBP1.35□□□□□ -2.19
SCFD1-216ENST00000555550 TAF7Q15545 349 aaPredicted RBP1.35□□□□□ -2.19
SCFD1-216ENST00000555550 CHRNA6Q15825 494 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 TMEM69Q5SWH9 247 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 C12orf54Q6X4T0 127 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 Q6ZS52 159 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 Q6ZSR3 168 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 DAZ4Q86SG3 579 aaKnown RBP1.35□□□□□ -2.19
SCFD1-216ENST00000555550 SNX31Q8N9S9 440 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 Q8NDZ9 215 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 RAB3IL1Q8TBN0 382 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 OR51E1Q8TCB6 317 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 GHSRQ92847 366 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 TUBGCP3Q96CW5 907 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 ECHDC3Q96DC8 303 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 CRACR2AQ9BSW2 395 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 DAZ1Q9NQZ3 744 aaKnown RBP1.35□□□□□ -2.19
SCFD1-216ENST00000555550 ASF1BQ9NVP2 202 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 ZNF492Q9P255 531 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 MCTS1Q9ULC4 181 aaKnown RBP1.35□□□□□ -2.19
SCFD1-216ENST00000555550 R4GN34 69 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 ATAD2BQ9ULI0 1458 aa1.35□□□□□ -2.19
SCFD1-216ENST00000555550 PRR14LQ5THK1 2151 aa1.34□□□□□ -2.19
SCFD1-216ENST00000555550 RAD51CO43502 376 aa1.34□□□□□ -2.19
SCFD1-216ENST00000555550 SCO1O75880 301 aa1.34□□□□□ -2.19
SCFD1-216ENST00000555550 MT-ND4P03905 459 aa1.34□□□□□ -2.19
SCFD1-216ENST00000555550 PTMAP06454 111 aaKnown RBP1.34□□□□□ -2.19
SCFD1-216ENST00000555550 ZNF24P17028 368 aa1.34□□□□□ -2.19
SCFD1-216ENST00000555550 EIF3EP60228 445 aaKnown RBP1.34□□□□□ -2.19
SCFD1-216ENST00000555550 SP4Q02446 784 aa1.34□□□□□ -2.19
SCFD1-216ENST00000555550 PSMD5Q16401 504 aa1.34□□□□□ -2.19
SCFD1-216ENST00000555550 SP6Q3SY56 376 aa1.34□□□□□ -2.19
SCFD1-216ENST00000555550 LUZP6Q538Z0 58 aa1.34□□□□□ -2.19
SCFD1-216ENST00000555550 APOBEC3HQ6NTF7 200 aaKnown RBP1.34□□□□□ -2.19
SCFD1-216ENST00000555550 UBE2J2Q8N2K1 259 aa1.34□□□□□ -2.19
SCFD1-216ENST00000555550 EIF1ADQ8N9N8 165 aaKnown RBP1.34□□□□□ -2.19
SCFD1-216ENST00000555550 ZNF606Q8WXB4 792 aa1.34□□□□□ -2.19
SCFD1-216ENST00000555550 N4BP2L2Q92802 583 aaPredicted RBP1.34□□□□□ -2.19
SCFD1-216ENST00000555550 KIFAP3Q92845 792 aa1.34□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms