RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 LRRK2Q5S007 2527 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 SHANK1Q9Y566 2161 aa6.85□□□□□ -1.31
LIMA1-216ENST00000552909 RNF222A6NCQ9 220 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 ACOD1A6NK06 481 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 EMC8O43402 210 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 KLF4O43474 513 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 FRS3O43559 492 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 TMEM127O75204 238 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 LY86O95711 162 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 PMS2P2O95744 297 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 IGHV2-5P01817 119 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 MT-ND4LP03901 98 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 HMGN2P05204 90 aaKnown RBP6.84□□□□□ -1.31
LIMA1-216ENST00000552909 CSF1P09603 554 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 SBK2P0C263 348 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 OR8U8P0C7N1 319 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 CD79AP11912 226 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 PLA2G2AP14555 144 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 RCC1P18754 421 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-216ENST00000552909 SRMP19623 302 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 CASRP41180 1078 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 RIDAP52758 137 aaKnown RBP6.84□□□□□ -1.31
LIMA1-216ENST00000552909 TLE1Q04724 770 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 RBM39Q14498 530 aaKnown RBP6.84□□□□□ -1.31
LIMA1-216ENST00000552909 LASP1Q14847 261 aaKnown RBP6.84□□□□□ -1.31
LIMA1-216ENST00000552909 CDK5R1Q15078 307 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 TAF13Q15543 124 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 IGFBP7Q16270 282 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 GFOD2Q3B7J2 385 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 TRMT12Q53H54 448 aaKnown RBP6.84□□□□□ -1.31
LIMA1-216ENST00000552909 PRR30Q53SZ7 412 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-216ENST00000552909 RPL13AP3Q6NVV1 102 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 FAM111BQ6SJ93 734 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 IGFL2Q6UWQ7 119 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 IGFL3Q6UXB1 125 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 DGAT2L6Q6ZPD8 337 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 LNX2Q8N448 690 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF433Q8N7K0 673 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-216ENST00000552909 APCDD1LQ8NCL9 501 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 OR7G2Q8NG99 324 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 OR52L1Q8NGH7 329 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 OR4A4PQ8NGN8 299 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 RNF141Q8WVD5 230 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 DIO2Q92813 273 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 HIST1H2BAQ96A08 127 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 CPNE2Q96FN4 548 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-216ENST00000552909 RBM18Q96H35 190 aaKnown RBP6.84□□□□□ -1.31
LIMA1-216ENST00000552909 NRIP2Q9BQI9 281 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 GGACTQ9BVM4 153 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 HCAR1Q9BXC0 346 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 ALX4Q9H161 411 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-216ENST00000552909 ACKR4Q9NPB9 350 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 KRCC1Q9NPI7 259 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-216ENST00000552909 RCC2Q9P258 522 aaKnown RBP6.84□□□□□ -1.31
LIMA1-216ENST00000552909 MRPS33Q9Y291 106 aaKnown RBP6.84□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF337Q9Y3M9 751 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 MMACHCQ9Y4U1 282 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 CPAMD8Q8IZJ3 1885 aa6.84□□□□□ -1.31
LIMA1-216ENST00000552909 H7C417 338 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 OGG1O15527 345 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 OIP5O43482 229 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 OR10H2O60403 315 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 CD2P06729 351 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 CHRM4P08173 479 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 SLC35E2P0CK97 266 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 CALCBP10092 127 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 NQO2P16083 231 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 LAP3P28838 519 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 HTR5AP47898 357 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 KHKP50053 298 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 CLDN12P56749 244 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 PJVKQ0ZLH3 352 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 ATXN7L3Q14CW9 347 aaPredicted RBP6.84□□□□□ -1.32
LIMA1-216ENST00000552909 LRRC37A5PQ49AS3 106 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 TP53I3Q53FA7 332 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 TMEM64Q6YI46 380 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 MBOAT2Q6ZWT7 520 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 SLC29A4Q7RTT9 530 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 ZNF321PQ8N8H1 164 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 POMGNT2Q8NAT1 580 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 INO80EQ8NBZ0 244 aaPredicted RBP6.84□□□□□ -1.32
LIMA1-216ENST00000552909 OR56A1Q8NGH5 318 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 OR51S1Q8NGJ8 323 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 OR5M8Q8NGP6 311 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 M1APQ8TC57 530 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 THAP3Q8WTV1 239 aaPredicted RBP6.84□□□□□ -1.32
LIMA1-216ENST00000552909 PTPMT1Q8WUK0 201 aaPredicted RBP6.84□□□□□ -1.32
LIMA1-216ENST00000552909 PHYHIPQ92561 330 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 CLCC1Q96S66 551 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 TEAD3Q99594 435 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 ARHGDIGQ99819 225 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 OR51V1Q9H2C8 321 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 TMEM27Q9HBJ8 222 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 ADGRL4Q9HBW9 690 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 MMP25Q9NPA2 562 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 ANKRD10Q9NXR5 420 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 UPB1Q9UBR1 384 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 MTFP1Q9UDX5 166 aa6.84□□□□□ -1.32
LIMA1-216ENST00000552909 ZNF223Q9UK11 482 aaPredicted RBP6.84□□□□□ -1.32
LIMA1-216ENST00000552909 FLNBO75369 2602 aaKnown RBP6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms