RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 SFRP4Q6FHJ7 346 aaPredicted RBP13.98□□□□□ -0.17
VPS29-204ENST00000548259 ERICH5Q6P6B1 374 aa13.98□□□□□ -0.17
VPS29-204ENST00000548259 NRMQ8IXM6 262 aa13.98□□□□□ -0.17
VPS29-204ENST00000548259 RNF113BQ8IZP6 322 aaKnown RBP13.98□□□□□ -0.17
VPS29-204ENST00000548259 BOLLQ8N9W6 283 aaKnown RBP13.98□□□□□ -0.17
VPS29-204ENST00000548259 PLPP7Q8NBV4 271 aa13.98□□□□□ -0.17
VPS29-204ENST00000548259 FAM156AQ8NDB6 213 aa13.98□□□□□ -0.17
VPS29-204ENST00000548259 C19orf18Q8NEA5 215 aa13.98□□□□□ -0.17
VPS29-204ENST00000548259 OR5R1Q8NH85 324 aa13.98□□□□□ -0.17
VPS29-204ENST00000548259 PARD6BQ9BYG5 372 aa13.98□□□□□ -0.17
VPS29-204ENST00000548259 CNTD2Q9H8S5 307 aa13.98□□□□□ -0.17
VPS29-204ENST00000548259 CTLA4P16410 223 aa13.97□□□□□ -0.17
VPS29-204ENST00000548259 CRYBA2P53672 197 aa13.97□□□□□ -0.17
VPS29-204ENST00000548259 LOXL3P58215 753 aa13.97□□□□□ -0.17
VPS29-204ENST00000548259 MZT1Q08AG7 82 aa13.97□□□□□ -0.17
VPS29-204ENST00000548259 TRAM2Q15035 370 aa13.97□□□□□ -0.17
VPS29-204ENST00000548259 CDONQ4KMG0 1287 aa13.97□□□□□ -0.17
VPS29-204ENST00000548259 GPR139Q6DWJ6 353 aa13.97□□□□□ -0.17
VPS29-204ENST00000548259 DNM1P34Q6PK57 102 aa13.97□□□□□ -0.17
VPS29-204ENST00000548259 BTN2A1Q7KYR7 527 aa13.97□□□□□ -0.17
VPS29-204ENST00000548259 RRM2BQ7LG56 351 aa13.97□□□□□ -0.17
VPS29-204ENST00000548259 DTX3Q8N9I9 347 aa13.97□□□□□ -0.17
VPS29-204ENST00000548259 Q96M85 177 aa13.97□□□□□ -0.17
VPS29-204ENST00000548259 FNDC11Q9BVV2 318 aa13.97□□□□□ -0.17
VPS29-204ENST00000548259 WDR76Q9H967 626 aa13.97□□□□□ -0.17
VPS29-204ENST00000548259 CTSZQ9UBR2 303 aa13.97□□□□□ -0.17
VPS29-204ENST00000548259 COA3Q9Y2R0 106 aaPredicted RBP13.97□□□□□ -0.17
VPS29-204ENST00000548259 ADAM18Q9Y3Q7 739 aa13.97□□□□□ -0.17
VPS29-204ENST00000548259 DOCK11Q5JSL3 2073 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 OOEPA6NGQ2 149 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 GPR37O15354 613 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 XPNPEP2O43895 674 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 CENPAP49450 140 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 PRKCDQ05655 676 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 COX10Q12887 443 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 ECH1Q13011 328 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 KRR1Q13601 381 aaKnown RBP13.96□□□□□ -0.17
VPS29-204ENST00000548259 ZBED5Q49AG3 693 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 MESTQ5EB52 335 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 PRAMEF6Q5VXH4 476 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 ZNF730Q6ZMV8 503 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 PGAP1Q75T13 922 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 ADCK1Q86TW2 530 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 PDZD9Q8IXQ8 264 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 OR13C2Q8NGS9 318 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 TPD52L3Q96J77 140 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 SYT4Q9H2B2 425 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 NMNAT1Q9HAN9 279 aaPredicted RBP13.96□□□□□ -0.17
VPS29-204ENST00000548259 ZNRD1Q9P1U0 126 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 FBLN5Q9UBX5 448 aa13.96□□□□□ -0.17
VPS29-204ENST00000548259 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.96□□□□□ -0.17
VPS29-204ENST00000548259 V9GYY5 206 aaPredicted RBP13.96□□□□□ -0.17
VPS29-204ENST00000548259 RNASEK-C17orf49H0YIS7 233 aa13.95□□□□□ -0.18
VPS29-204ENST00000548259 GMDSO60547 372 aa13.95□□□□□ -0.18
VPS29-204ENST00000548259 PRB2P02812 416 aaPredicted RBP13.95□□□□□ -0.18
VPS29-204ENST00000548259 GK2Q14410 553 aaPredicted RBP13.95□□□□□ -0.18
VPS29-204ENST00000548259 MPPED2Q15777 294 aa13.95□□□□□ -0.18
VPS29-204ENST00000548259 KCNMB1Q16558 191 aa13.95□□□□□ -0.18
VPS29-204ENST00000548259 LRRC23Q53EV4 343 aaPredicted RBP13.95□□□□□ -0.18
VPS29-204ENST00000548259 CYBRD1Q53TN4 286 aa13.95□□□□□ -0.18
VPS29-204ENST00000548259 MRPL21Q7Z2W9 205 aaKnown RBP13.95□□□□□ -0.18
VPS29-204ENST00000548259 VMO1Q7Z5L0 202 aa13.95□□□□□ -0.18
VPS29-204ENST00000548259 ST8SIA4Q92187 359 aa13.95□□□□□ -0.18
VPS29-204ENST00000548259 DMRTB1Q96MA1 342 aa13.95□□□□□ -0.18
VPS29-204ENST00000548259 ONECUT1Q9UBC0 465 aa13.95□□□□□ -0.18
VPS29-204ENST00000548259 RPUSD1Q9UJJ7 312 aaKnown RBP13.95□□□□□ -0.18
VPS29-204ENST00000548259 RPS6KA6Q9UK32 745 aa13.95□□□□□ -0.18
VPS29-204ENST00000548259 A4GNTQ9UNA3 340 aa13.95□□□□□ -0.18
VPS29-204ENST00000548259 TMEM5Q9Y2B1 443 aa13.95□□□□□ -0.18
VPS29-204ENST00000548259 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.94□□□□□ -0.18
VPS29-204ENST00000548259 DVL1O14640 695 aa13.94□□□□□ -0.18
VPS29-204ENST00000548259 OR10H3O60404 316 aa13.94□□□□□ -0.18
VPS29-204ENST00000548259 LCATP04180 440 aa13.94□□□□□ -0.18
VPS29-204ENST00000548259 CRABP1P29762 137 aa13.94□□□□□ -0.18
VPS29-204ENST00000548259 SDHAP31040 664 aa13.94□□□□□ -0.18
VPS29-204ENST00000548259 GZMMP51124 257 aa13.94□□□□□ -0.18
VPS29-204ENST00000548259 NANOGP8Q6NSW7 305 aa13.94□□□□□ -0.18
VPS29-204ENST00000548259 METAP1DQ6UB28 335 aaPredicted RBP13.94□□□□□ -0.18
VPS29-204ENST00000548259 COLCA1Q6ZS62 124 aa13.94□□□□□ -0.18
VPS29-204ENST00000548259 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.94□□□□□ -0.18
VPS29-204ENST00000548259 OFCC1Q8IZS5 231 aa13.94□□□□□ -0.18
VPS29-204ENST00000548259 PIP4P2Q8N4L2 257 aa13.94□□□□□ -0.18
VPS29-204ENST00000548259 OR4S1Q8NGB4 309 aa13.94□□□□□ -0.18
VPS29-204ENST00000548259 OR8J3Q8NGG0 315 aa13.94□□□□□ -0.18
VPS29-204ENST00000548259 ACOT11Q8WXI4 607 aaPredicted RBP13.94□□□□□ -0.18
VPS29-204ENST00000548259 SGCDQ92629 289 aa13.94□□□□□ -0.18
VPS29-204ENST00000548259 SLCO4A1Q96BD0 722 aa13.94□□□□□ -0.18
VPS29-204ENST00000548259 ADAT1Q9BUB4 502 aaKnown RBP13.94□□□□□ -0.18
VPS29-204ENST00000548259 SMURF1Q9HCE7 757 aa13.94□□□□□ -0.18
VPS29-204ENST00000548259 NECAP2Q9NVZ3 263 aa13.94□□□□□ -0.18
VPS29-204ENST00000548259 hCG_1807616A0A1W2PRN6 198 aa13.93□□□□□ -0.18
VPS29-204ENST00000548259 A6NLC8 198 aa13.93□□□□□ -0.18
VPS29-204ENST00000548259 F5H5K5 113 aa13.93□□□□□ -0.18
VPS29-204ENST00000548259 NDUFB2O95178 105 aa13.93□□□□□ -0.18
VPS29-204ENST00000548259 GYPAP02724 150 aa13.93□□□□□ -0.18
VPS29-204ENST00000548259 IFNW1P05000 195 aa13.93□□□□□ -0.18
VPS29-204ENST00000548259 CA6P23280 308 aa13.93□□□□□ -0.18
VPS29-204ENST00000548259 SLC35E4Q6ICL7 350 aa13.93□□□□□ -0.18
VPS29-204ENST00000548259 TMPRSS11FQ6ZWK6 438 aa13.93□□□□□ -0.18
VPS29-204ENST00000548259 MBOAT2Q6ZWT7 520 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms