RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ALKBH1Q13686 389 aaKnown RBP4.94□□□□□ -1.62
LIMA1-203ENST00000547825 CDK5R1Q15078 307 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 IAH1Q2TAA2 248 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-203ENST00000547825 C2orf76Q3KRA6 126 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 PLA1AQ53H76 456 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 ACTBL2Q562R1 376 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 MFSD12Q6NUT3 480 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 CLEC9AQ6UXN8 241 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 GLDNQ6ZMI3 551 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-203ENST00000547825 UBALD2Q8IYN6 164 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 GABRG1Q8N1C3 465 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 PRSS33Q8NF86 280 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 FNDC9Q8TBE3 224 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 PELI1Q96FA3 418 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 SCMH1Q96GD3 660 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 GHITMQ9H3K2 345 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 ISYNA1Q9NPH2 558 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 CMC2Q9NRP2 79 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 COPS7AQ9UBW8 275 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF292O60281 2723 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 ADAMTS20P59510 1910 aa4.94□□□□□ -1.62
LIMA1-203ENST00000547825 A0A1W2PPC4 97 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 ZFPL1O95159 310 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 TNFRSF6BO95407 300 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 ARG1P05089 322 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 CRYBA1P05813 215 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 CALCBP10092 127 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 GABRA1P14867 456 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 SERPINA2P20848 420 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 ATP1B3P54709 279 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 IRF4Q15306 451 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 GUCA2BQ16661 112 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 MSMPQ1L6U9 139 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 SLC36A2Q495M3 483 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF425Q6IV72 752 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 STAC2Q6ZMT1 411 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 ACOT7LQ6ZUV0 252 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 ABHD12BQ7Z5M8 362 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-203ENST00000547825 BAP18Q8IXM2 172 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 SMIM19Q96E16 107 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF578Q96N58 590 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-203ENST00000547825 SDF2Q99470 211 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 URM1Q9BTM9 101 aaKnown RBP4.93□□□□□ -1.62
LIMA1-203ENST00000547825 RPP25Q9BUL9 199 aaKnown RBP4.93□□□□□ -1.62
LIMA1-203ENST00000547825 ENKD1Q9H0I2 346 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 UNKLQ9H9P5 680 aaKnown RBP4.93□□□□□ -1.62
LIMA1-203ENST00000547825 INPP5EQ9NRR6 644 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 FBXO34Q9NWN3 711 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 WNT16Q9UBV4 365 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF230Q9UIE0 474 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-203ENST00000547825 HHLA2Q9UM44 414 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 LSM2Q9Y333 95 aaKnown RBP4.93□□□□□ -1.62
LIMA1-203ENST00000547825 UBE2J1Q9Y385 318 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-203ENST00000547825 ROS1P08922 2347 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 OR6C76A6NM76 312 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 P2RY10O00398 339 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 HSPA12AO43301 675 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 PMS2P2O95744 297 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 ITGB2P05107 769 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 SULT1A3P0DMM9 295 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 SULT1A4P0DMN0 295 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 TMIGD3P0DMS9 266 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-203ENST00000547825 FSTP19883 344 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 NDUFS1P28331 727 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 GDI1P31150 447 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 BSGP35613 385 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 ASCL1P50553 236 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 SLC7A9P82251 487 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 CDK3Q00526 305 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 PLA2G7Q13093 441 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 KHDC1LQ5JSQ8 128 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 CORO6Q6QEF8 472 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 PARM1Q6UWI2 310 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 GLRX5Q86SX6 157 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 MARCH1Q8TCQ1 289 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 RSC1A1Q92681 617 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 SMARCD2Q92925 531 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 FAM131CQ96AQ9 280 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 FGGYQ96C11 551 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 CMBLQ96DG6 245 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 MRGPRX1Q96LB2 322 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 TCEAL7Q9BRU2 100 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 OR10A5Q9H207 317 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 ZFP64Q9NPA5 681 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 OBP2BQ9NPH6 170 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.93□□□□□ -1.62
LIMA1-203ENST00000547825 UFSP2Q9NUQ7 469 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 PTPRBP23467 1997 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 NUP210LQ5VU65 1888 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 OTOL1A6NHN0 477 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-203ENST00000547825 LRP3O75074 770 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 IFNA10P01566 189 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 IFNA4P05014 189 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 S100GP29377 79 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 EIF2S3P41091 472 aaKnown RBP4.93□□□□□ -1.62
LIMA1-203ENST00000547825 GATA4P43694 442 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 PRPS1P60891 318 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 UBXN2BQ14CS0 331 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 FAM78AQ5JUQ0 283 aa4.93□□□□□ -1.62
LIMA1-203ENST00000547825 DCAF12L2Q5VW00 463 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms