RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 Q9H521 79 aa11.83□□□□□ -0.52
PTCH1-213ENST00000546820 RAB26Q9ULW5 256 aa11.83□□□□□ -0.52
PTCH1-213ENST00000546820 FZR1Q9UM11 496 aa11.83□□□□□ -0.52
PTCH1-213ENST00000546820 COPS3Q9UNS2 423 aa11.83□□□□□ -0.52
PTCH1-213ENST00000546820 KLHDC2Q9Y2U9 406 aa11.83□□□□□ -0.52
PTCH1-213ENST00000546820 LRP12Q9Y561 859 aa11.83□□□□□ -0.52
PTCH1-213ENST00000546820 N6AMT1Q9Y5N5 214 aa11.83□□□□□ -0.52
PTCH1-213ENST00000546820 IGLV3-9A0A075B6K5 115 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 A0A1W2PPW3 197 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 TMEM129A0AVI4 362 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 METTL15A6NJ78 407 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 OVOL3O00110 214 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 SULT1C4O75897 302 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 IGHV3-13P01766 116 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 RAC2P15153 192 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 SELEP16581 610 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 LIPAP38571 399 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 MED21Q13503 144 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 DEFB113Q30KQ7 82 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 ZNF829Q3KNS6 432 aaPredicted RBP11.82□□□□□ -0.52
PTCH1-213ENST00000546820 C11orf71Q6IPW1 123 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 FBXW12Q6X9E4 464 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 EGFL6Q8IUX8 553 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 YIPF7Q8N8F6 280 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 HAVCR1Q96D42 359 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 PGAM5Q96HS1 289 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 OR10A2Q9H208 303 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 DYNLRB1Q9NP97 96 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 BRD7Q9NPI1 651 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 INPP5EQ9NRR6 644 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 CYSLTR2Q9NS75 346 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 PTTG3PQ9NZH4 202 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 TAAR3PQ9P1P4 343 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 PLCE1Q9P212 2302 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 RAI1Q7Z5J4 1906 aaPredicted RBP11.82□□□□□ -0.52
PTCH1-213ENST00000546820 APCP25054 2843 aa11.82□□□□□ -0.52
PTCH1-213ENST00000546820 TMEM269A0A1B0GVZ9 245 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 PLSCR5A0PG75 271 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 EFCAB10A6NFE3 127 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 J3QRE1 110 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 PSMD9O00233 223 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 TBX1O43435 398 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 XRCC2O43543 280 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 CLPTM1O96005 669 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 CFL1P23528 166 aaKnown RBP11.81□□□□□ -0.52
PTCH1-213ENST00000546820 DCKP27707 260 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 PPOXP50336 477 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 ZNF121P58317 390 aaPredicted RBP11.81□□□□□ -0.52
PTCH1-213ENST00000546820 SMN1Q16637 294 aaKnown RBP11.81□□□□□ -0.52
PTCH1-213ENST00000546820 NKPD1Q17RQ9 610 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 FAM57BQ71RH2 274 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 PGAP1Q75T13 922 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 FAM220AQ7Z4H9 259 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 LRP11Q86VZ4 500 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 FBLIM1Q8WUP2 373 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 IGFBPL1Q8WX77 278 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 CMBLQ96DG6 245 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 VRK1Q99986 396 aaPredicted RBP11.81□□□□□ -0.52
PTCH1-213ENST00000546820 CACNG6Q9BXT2 260 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 ANKRD60Q9BZ19 345 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 RAB1BQ9H0U4 201 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 OPA3Q9H6K4 179 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 PLCXD1Q9NUJ7 323 aa11.81□□□□□ -0.52
PTCH1-213ENST00000546820 ZNF701Q9NV72 531 aaPredicted RBP11.81□□□□□ -0.52
PTCH1-213ENST00000546820 CHCHD3Q9NX63 227 aaKnown RBP11.81□□□□□ -0.52
PTCH1-213ENST00000546820 CGGBP1Q9UFW8 167 aaPredicted RBP11.81□□□□□ -0.52
PTCH1-213ENST00000546820 ABCA12Q86UK0 2595 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 LRBAP50851 2863 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 HRNRQ86YZ3 2850 aaPredicted RBP11.8□□□□□ -0.52
PTCH1-213ENST00000546820 H7C417 338 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 M0R233 179 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 TIMM8AO60220 97 aaPredicted RBP11.8□□□□□ -0.52
PTCH1-213ENST00000546820 ADRA2AP08913 450 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 SLC2A1P11166 492 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 PAX1P15863 534 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 MYF6P23409 242 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 MPV17P39210 176 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 MMP16P51512 607 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 PSMA6P60900 246 aaKnown RBP11.8□□□□□ -0.52
PTCH1-213ENST00000546820 ACTA2P62736 377 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 ACTG2P63267 376 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 PSG7Q13046 419 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 GALEQ14376 348 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 TIGD6Q17RP2 521 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 MSMPQ1L6U9 139 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 ZMAT1Q5H9K5 638 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 MRPL21Q7Z2W9 205 aaKnown RBP11.8□□□□□ -0.52
PTCH1-213ENST00000546820 LRRC75A-AS1Q8N1F1 130 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 BPIFB6Q8NFQ5 453 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 OR52I1Q8NGK6 324 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 ZNF184Q99676 751 aaPredicted RBP11.8□□□□□ -0.52
PTCH1-213ENST00000546820 TTTY10Q9BZA0 68 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 RGCCQ9H4X1 137 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 BARX1Q9HBU1 254 aaPredicted RBP11.8□□□□□ -0.52
PTCH1-213ENST00000546820 FGF20Q9NP95 211 aaPredicted RBP11.8□□□□□ -0.52
PTCH1-213ENST00000546820 SCN3BQ9NY72 215 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 ZNF391Q9UJN7 358 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 SPG11Q96JI7 2443 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 ITPR2Q14571 2701 aa11.8□□□□□ -0.52
PTCH1-213ENST00000546820 AKAP6Q13023 2319 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms