RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 OR1F12Q8NHA8 337 aa11.85□□□□□ -0.51
CPSF1-201ENST00000526271 FAM162AQ96A26 154 aa11.85□□□□□ -0.51
CPSF1-201ENST00000526271 NSMCE2Q96MF7 247 aa11.85□□□□□ -0.51
CPSF1-201ENST00000526271 NUDT16L1Q9BRJ7 211 aaKnown RBP11.85□□□□□ -0.51
CPSF1-201ENST00000526271 SYT4Q9H2B2 425 aa11.85□□□□□ -0.51
CPSF1-201ENST00000526271 RPS6KA6Q9UK32 745 aa11.85□□□□□ -0.51
CPSF1-201ENST00000526271 LHFPL6Q9Y693 200 aa11.85□□□□□ -0.51
CPSF1-201ENST00000526271 KMT2CQ8NEZ4 4911 aaKnown RBP11.84□□□□□ -0.51
CPSF1-201ENST00000526271 TCRBV5S2A0A599 114 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 IQCF6A8MYZ5 107 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 EFCAB9A8MZ26 197 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 NDUFA7O95182 113 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 FSTL3O95633 263 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 CD14P08571 375 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 ATP6V1B2P21281 511 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 TNFSF4P23510 183 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 MTNR1AP48039 350 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 PITPNBP48739 271 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 GNB2P62879 340 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 MPPED2Q15777 294 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 COLCA1Q6ZS62 124 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 TMPRSS11FQ6ZWK6 438 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 NAA40Q86UY6 237 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 BHLHE23Q8NDY6 225 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 FNDC8Q8TC99 324 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 NEIL1Q96FI4 390 aaPredicted RBP11.84□□□□□ -0.51
CPSF1-201ENST00000526271 TPD52L3Q96J77 140 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 TSSK2Q96PF2 358 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 SMURF1Q9HCE7 757 aa11.84□□□□□ -0.51
CPSF1-201ENST00000526271 SAMD4AQ9UPU9 718 aaKnown RBP11.84□□□□□ -0.51
CPSF1-201ENST00000526271 NBEAL2Q6ZNJ1 2754 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 CENPVL3A0A0U1RRI6 287 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 AQP12BA6NM10 295 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 TSPAN15O95858 294 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 NR2C1P13056 603 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 TUBG1P23258 451 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 CFHR2P36980 270 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 CDKN2AP42771 156 aaKnown RBP11.83□□□□□ -0.52
CPSF1-201ENST00000526271 GATA4P43694 442 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 PROK1P58294 105 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 ELF3P78545 371 aaPredicted RBP11.83□□□□□ -0.52
CPSF1-201ENST00000526271 AQP6Q13520 282 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 KCNMB1Q16558 191 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 PRAMEF6Q5VXH4 476 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 OLFML2AQ68BL7 652 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 CORO6Q6QEF8 472 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 CYP2R1Q6VVX0 501 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 OAFQ86UD1 273 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 AQP12AQ8IXF9 295 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 FGFRL1Q8N441 504 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 LZICQ8WZA0 190 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 CCDC124Q96CT7 223 aaKnown RBP11.83□□□□□ -0.52
CPSF1-201ENST00000526271 PYURFQ96I23 114 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 WACQ9BTA9 647 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 NUAK2Q9H093 628 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 TUBG2Q9NRH3 451 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 VSX1Q9NZR4 365 aaPredicted RBP11.83□□□□□ -0.52
CPSF1-201ENST00000526271 MIOXQ9UGB7 285 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 TMCC3Q9ULS5 477 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 SIGLEC7Q9Y286 467 aa11.83□□□□□ -0.52
CPSF1-201ENST00000526271 CLPSL1A2RUU4 121 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 RRP9O43818 475 aaKnown RBP11.82□□□□□ -0.52
CPSF1-201ENST00000526271 SLC16A7O60669 478 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 FAM20BO75063 409 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 ZNF682O95780 498 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 KNG1P01042 644 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 SEMG1P04279 462 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 PSKH1P11801 424 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 LSM6P62312 80 aaKnown RBP11.82□□□□□ -0.52
CPSF1-201ENST00000526271 KRR1Q13601 381 aaKnown RBP11.82□□□□□ -0.52
CPSF1-201ENST00000526271 ARL9Q6T311 187 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 BTNL3Q6UXE8 466 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 CFAP77Q6ZQR2 320 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 MBOAT2Q6ZWT7 520 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 C1QL4Q86Z23 238 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 OR13G1Q8NGZ3 307 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 LINC01006Q8NI28 216 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 Q8TCH9 128 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 ACOT11Q8WXI4 607 aaPredicted RBP11.82□□□□□ -0.52
CPSF1-201ENST00000526271 PKP2Q99959 881 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 RBM4BQ9BQ04 359 aaKnown RBP11.82□□□□□ -0.52
CPSF1-201ENST00000526271 SIRPDQ9H106 197 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 PNRC2Q9NPJ4 139 aaKnown RBP11.82□□□□□ -0.52
CPSF1-201ENST00000526271 NRIP3Q9NQ35 241 aa11.82□□□□□ -0.52
CPSF1-201ENST00000526271 NOTCH3Q9UM47 2321 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 IGLV1-36A0A0B4J1U3 117 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 A0A1B0GW55 424 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 TCRBV3S1A0A5B6 114 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 ERICH4A6NGS2 130 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 SURF4O15260 269 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 IGHV4-59P01825 116 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 DUX4L2P0CJ85 424 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 DUX4L3P0CJ86 424 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 DUX4L4P0CJ87 422 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 DUX4L5P0CJ88 424 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 DUX4L6P0CJ89 424 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 DUX4L7P0CJ90 424 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 CPT2P23786 658 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 FLOT2Q14254 428 aa11.81□□□□□ -0.52
CPSF1-201ENST00000526271 GK2Q14410 553 aaPredicted RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms