RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 SIRPB1O00241 398 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 BET1O15155 118 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 TRAPPC3O43617 180 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 FCN3O75636 299 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 SCRG1O75711 98 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 GPX5O75715 221 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 ATP5LO75964 103 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 AP2A1O95782 977 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 TSPAN13O95857 204 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 HLA-DRAP01903 254 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 MMP1P03956 469 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 SEMG1P04279 462 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 HMGN1P05114 100 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 HPNP05981 417 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 GABRR1P24046 479 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 NUDT1P36639 197 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 GSSP48637 474 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 HSPA13P48723 471 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 CX3CR1P49238 355 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 POLR2GP62487 172 aaKnown RBP eCLIP3.58□□□□□ -1.84
SF3B1-212ENST00000496458 SELENBP1Q13228 472 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 DCST2Q5T1A1 773 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 GPR107Q5VW38 600 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 C4orf22Q6V702 233 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 IDO2Q6ZQW0 420 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 Q6ZSR3 168 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 SLC35D2Q76EJ3 337 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 APTXQ7Z2E3 356 aaKnown RBP3.58□□□□□ -1.84
SF3B1-212ENST00000496458 FAM122BQ7Z309 247 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 PLCZ1Q86YW0 608 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 CLVS1Q8IUQ0 354 aaPredicted RBP3.58□□□□□ -1.84
SF3B1-212ENST00000496458 LINC01561Q8N1V8 128 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 C15orf54Q8N8G6 183 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 ATP6V0D2Q8N8Y2 350 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 ZSCAN4Q8NAM6 433 aaPredicted RBP3.58□□□□□ -1.84
SF3B1-212ENST00000496458 CYB561A3Q8NBI2 242 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 OR10Z1Q8NGY1 313 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 OR52E5Q8NH55 327 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 NUBPLQ8TB37 319 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 PLPPR1Q8TBJ4 325 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 NEIL2Q969S2 332 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 FAM131CQ96AQ9 280 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 CCDC127Q96BQ5 260 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 SDSLQ96GA7 329 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 CPB2Q96IY4 423 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 C9orf72Q96LT7 481 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 NAPGQ99747 312 aaPredicted RBP3.58□□□□□ -1.84
SF3B1-212ENST00000496458 RAB34Q9BZG1 259 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 PPA2Q9H2U2 334 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 OR51M1Q9H341 326 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 PLGRKTQ9HBL7 147 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 NANSQ9NR45 359 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 STMN3Q9NZ72 180 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 ABCC12Q96J65 1359 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 C10orf71Q711Q0 1435 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 PXDNLA1KZ92 1463 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 PCNTO95613 3336 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 NRXN2Q9P2S2 1712 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 ARFGEF2Q9Y6D5 1785 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 SBF1O95248 1867 aa3.58□□□□□ -1.84
SF3B1-212ENST00000496458 BRCA1P38398 1863 aaKnown RBP3.58□□□□□ -1.84
SF3B1-212ENST00000496458 PRSS37A4D1T9 235 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 VPS37CA5D8V6 355 aaPredicted RBP3.57□□□□□ -1.84
SF3B1-212ENST00000496458 MGAT4DA6NG13 374 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 SAGE2PA6NJ88 616 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 E7EWF7 191 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 RNASEK-C17orf49H0YIS7 233 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 RFXANKO14593 260 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 TOR1AO14656 332 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 PSTPIP1O43586 416 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 NDUFA2O43678 99 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 CA11O75493 328 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 ATP5HO75947 161 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 BRI3O95415 125 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 KRT75O95678 551 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 IGKV5-2P06315 115 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 RETP07949 1114 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 RPS17P08708 135 aaKnown RBP3.57□□□□□ -1.84
SF3B1-212ENST00000496458 ANXA5P08758 320 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 PSG2P11465 335 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 ATF6P18850 670 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 VDAC1P21796 283 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 ATP5A1P25705 553 aaKnown RBP3.57□□□□□ -1.84
SF3B1-212ENST00000496458 VHLP40337 213 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 OPRD1P41143 372 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 MAP3K8P41279 467 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 ATP6V0D1P61421 351 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 ADARB1P78563 741 aaKnown RBP3.57□□□□□ -1.84
SF3B1-212ENST00000496458 TCHHQ07283 1943 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 SMARCB1Q12824 385 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 RAB40BQ12829 278 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 ART3Q13508 389 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 TMEM52BQ4KMG9 183 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 ANKRD36CQ5JPF3 1778 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 SPOPLQ6IQ16 392 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 NIPAL1Q6NVV3 410 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 FAHD2BQ6P2I3 314 aaPredicted RBP3.57□□□□□ -1.84
SF3B1-212ENST00000496458 DHRS4L2Q6PKH6 230 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 CERS6Q6ZMG9 384 aa3.57□□□□□ -1.84
SF3B1-212ENST00000496458 SLC25A48Q6ZT89 311 aaKnown RBP3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms