RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 TMPPEQ6ZT21 453 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 HOGA1Q86XE5 327 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 MARCH1Q8TCQ1 289 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 OIT3Q8WWZ8 545 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 C8orf44Q96CB5 159 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 FOXN4Q96NZ1 517 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 STARD5Q9NSY2 213 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 R4GMQ9 66 aa11.89□□□□□ -0.51
USP40-214ENST00000483519 A0A0J9YY10 115 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 PRSS37A4D1T9 235 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 MSGN1A6NI15 193 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 C11orf98E9PRG8 122 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 TAAR5O14804 337 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 ZNF264O43296 627 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 PLRG1O43660 514 aaKnown RBP11.88□□□□□ -0.51
USP40-214ENST00000483519 SLC16A7O60669 478 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 APBB3O95704 486 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 MT-ND4LP03901 98 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 CPT2P23786 658 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 GPR3P46089 330 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 C2orf27AQ580R0 203 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 MDGA2Q7Z553 956 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 OR52N5Q8NH56 324 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 CCL4L1Q8NHW4 92 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 HIST1H2BAQ96A08 127 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 ABHD6Q9BV23 337 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 OR10A5Q9H207 317 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 MRPL22Q9NWU5 206 aaKnown RBP11.88□□□□□ -0.51
USP40-214ENST00000483519 METTL1Q9UBP6 276 aaKnown RBP11.88□□□□□ -0.51
USP40-214ENST00000483519 DNAJB11Q9UBS4 358 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 KPTNQ9Y664 436 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 TRANK1O15050 2925 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 OIP5O43482 229 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 SSX5O60225 188 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 FBXO24O75426 580 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 ISG15P05161 165 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 ZNF44P15621 663 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 SLC22A6Q4U2R8 563 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 PTCRAQ6ISU1 281 aaPredicted RBP11.88□□□□□ -0.51
USP40-214ENST00000483519 CBLN3Q6UW01 205 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 ZNF704Q6ZNC4 412 aaPredicted RBP11.88□□□□□ -0.51
USP40-214ENST00000483519 C1orf122Q6ZSJ8 110 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 SLC29A4Q7RTT9 530 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 FRMD1Q8N878 549 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 CMBLQ96DG6 245 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 CLCC1Q96S66 551 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 FN3KRPQ9HA64 309 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 TINAGQ9UJW2 476 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 EMC9Q9Y3B6 208 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 CHD7Q9P2D1 2997 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 WIPF3A6NGB9 483 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 TGFBR3LH3BV60 316 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 LRP3O75074 770 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 RNH1P13489 461 aaKnown RBP11.88□□□□□ -0.51
USP40-214ENST00000483519 GDI1P31150 447 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 CD80P33681 288 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 LPAR6P43657 344 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 GSK3AP49840 483 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 DVL1P1P54792 670 aaPredicted RBP11.88□□□□□ -0.51
USP40-214ENST00000483519 BTG2P78543 158 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 TMEM244Q5VVB8 128 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 MED25Q71SY5 747 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 ASB16Q96NS5 453 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 OR5B2Q96R09 309 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 SLC5A7Q9GZV3 580 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 TAF9BQ9HBM6 251 aa11.88□□□□□ -0.51
USP40-214ENST00000483519 CACNA1CQ13936 2221 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 PMP2P02689 132 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 CSTBP04080 98 aaKnown RBP11.87□□□□□ -0.51
USP40-214ENST00000483519 FCGR3AP08637 254 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 ZNF14P17017 642 aaPredicted RBP11.87□□□□□ -0.51
USP40-214ENST00000483519 RCC1P18754 421 aaPredicted RBP11.87□□□□□ -0.51
USP40-214ENST00000483519 AGAP20933 346 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 RPL27P61353 136 aaKnown RBP11.87□□□□□ -0.51
USP40-214ENST00000483519 AKIRIN2Q53H80 203 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 LYPD6Q86Y78 171 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 OR4K15Q8NH41 348 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 TERB2Q8NHR7 220 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 NUBPLQ8TB37 319 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 KIRREL1Q96J84 757 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 ZC3H10Q96K80 434 aaKnown RBP11.87□□□□□ -0.51
USP40-214ENST00000483519 NECAB3Q96P71 396 aaPredicted RBP11.87□□□□□ -0.51
USP40-214ENST00000483519 NUDT16L1Q9BRJ7 211 aaKnown RBP11.87□□□□□ -0.51
USP40-214ENST00000483519 LAT2Q9GZY6 243 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 CNTD2Q9H8S5 307 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 PDE7BQ9NP56 450 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 RPS10P5Q9NQ39 176 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 PARP11Q9NR21 331 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 OR5AC2Q9NZP5 309 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 PRODH2Q9UF12 536 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 RPH3AQ9Y2J0 694 aaPredicted RBP11.87□□□□□ -0.51
USP40-214ENST00000483519 IGLV1-36A0A0B4J1U3 117 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 SFT2D2O95562 160 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 ADH6P28332 368 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 SULT1A2P50226 295 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 FABP9Q0Z7S8 132 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 ACTBL2Q562R1 376 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 DHRS11Q6UWP2 260 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 C5orf46Q6UWT4 87 aa11.87□□□□□ -0.51
USP40-214ENST00000483519 MAMDC2Q7Z304 686 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms