RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 HLA-DPB1P04440 258 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SELEP16581 610 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ANOS1P23352 680 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 OTX1P32242 354 aaPredicted RBP10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PSMB10P40306 273 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 CD200P41217 278 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 HMGA2P52926 109 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SMIM11AP58511 58 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ECH1Q13011 328 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SLC9A3R2Q15599 337 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 CLEC12AQ5QGZ9 265 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 FAM201AQ5SY85 155 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 LEG1Q6P5S2 330 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 DNM1P34Q6PK57 102 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SHISA2Q6UWI4 295 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 MOGAT3Q86VF5 341 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 OR52E2Q8NGJ4 325 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 OR10S1Q8NGN2 331 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 OR4K13Q8NH42 304 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 NEIL1Q96FI4 390 aaPredicted RBP10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 MAP6Q96JE9 813 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 WDR76Q9H967 626 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 IL1RAPQ9NPH3 570 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 KRCC1Q9NPI7 259 aaPredicted RBP10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 OR5V1Q9UGF6 321 aa10.22□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 VWFP04275 2813 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 CMYA5Q8N3K9 4069 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 GADD45GO95257 159 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 FAM107AO95990 144 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SLC6A6P31641 620 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 BAMBIQ13145 260 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 LYPD2Q6UXB3 125 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 RBMS3Q6XE24 437 aaKnown RBP10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 LINC00346Q8IVM7 164 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PARP8Q8N3A8 854 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 FITM2Q8N6M3 262 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 RNF148Q8N7C7 305 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 BHLHE23Q8NDY6 225 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 FANK1Q8TC84 345 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ZNRF4Q8WWF5 429 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 DUX5Q96PT3 197 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 CCT8L2Q96SF2 557 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ATF6BQ99941 703 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 RPRD1BQ9NQG5 326 aaKnown RBP10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 KCNG2Q9UJ96 466 aa10.21□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 IGHV3-64DA0A0J9YX35 117 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 LRRC30A6NM36 301 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 POM121CA8CG34 1229 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 F5H5K5 113 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 BHLHE40O14503 412 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 PHYHO14832 338 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 RENP00797 406 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 PSKH1P11801 424 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 RPS2P15880 293 aaKnown RBP10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 MNAT1P51948 309 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 PRSS12P56730 875 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 GNB2P62879 340 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 TRAP1Q12931 704 aaKnown RBP10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 TSPAN31Q12999 210 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 KRT72Q14CN4 511 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 MPPED2Q15777 294 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 PCK2Q16822 640 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SLC36A3Q495N2 470 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 WDR25Q64LD2 544 aaPredicted RBP10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 PGBD2Q6P3X8 592 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 BTNL3Q6UXE8 466 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 ZNF620Q6ZNG0 422 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 DCDC5Q6ZRR9 648 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 C1orf87Q8N0U7 546 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SLCO4A1Q96BD0 722 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 PLEKHA8Q96JA3 519 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 PITX2Q99697 317 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 HCAR1Q9BXC0 346 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 MS4A7Q9GZW8 240 aaPredicted RBP10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 NDE1Q9NXR1 346 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 FAM53CQ9NYF3 392 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 IL20Q9NYY1 176 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 POLR1DQ9Y2S0 133 aa10.2□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 C5orf63A6NC05 138 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 C22orf46C9J442 243 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 OR10H3O60404 316 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 FAM20BO75063 409 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 MTNR1AP48039 350 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 PITPNBP48739 271 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 CENPAP49450 140 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 BPIFB3P59826 476 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 IL13RA1P78552 427 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SPIBQ01892 262 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 ZNF92Q03936 586 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 ZNF770Q6IQ21 691 aaPredicted RBP10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 C16orf87Q6PH81 154 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 JAZF1Q86VZ6 243 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 PLPP7Q8NBV4 271 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SDR9C7Q8NEX9 313 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 OR8B3Q8NGG8 313 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 GNPDA2Q8TDQ7 276 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SLC25A28Q96A46 364 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 OR8B2Q96RD0 313 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 NUDT16L1Q9BRJ7 211 aaKnown RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms